Non-Coding RNA Search

Ss1.1-rduo404b_l16.5

Sequence:


               
               CTGTCGAATGTTTATTATGCGTCACAGGATCTAGTTGTTACGTACTATTTAACTCTTACA
ATGAGGATGAGGTAGGTAAATTTTCATTTTATTAATACAGGAACTATCTCACTGAAGCTA
ATGACCCGCCTGAGTCTAGTAATCGGCAGAGCAGAGACTCAGAGGCAGGCCTTTCTGATT
CTACCCCCCGTGCTTTTTTCACCATCCATCCTTCCATCCATCTATCCAGCCAGCCAGCCA
GCAACCCATCTAGCCGGCATTTATCTTGATTCTCAAACTGAGATGCACGTAGAAAAGCAG
GAGTTGGAAAATATAGTCAGTGGCCCAAGATAAATACGATGCATCTTCTTGGAGTGATTT
TACTCAATAGTTCAGGAAGAGGGAGAAGGTAACTTTATTTGCCTATTAAAATCTGCATCA
GGGCAAAATTTGAATGCAATTTTAAAATAAAATCTAAAAGTCCAGAGATCCATGCCTAGG
GCTCTGGATTATGTTCTCTGTCCATGGGGGTGTTTAAGAAGCCCTGCGCTGCCTGAAAGG
ATGCCAGCTTTGAGAACCAAAGAGGTTGGGTGAGCCACCAAGGTCACAAAGTCAGGACCC
AAATCCAGATGTCCCTGACTCCAAAGTCCATGCCCTGCTGGGGGACTCTGACCTTATGTC
CTAGATGCCATAGGCCCTGCCTCTTCTTAGCACCATGATGGGAACTCAGGAAATGAGGCG
GGGACTCTAAAAATCAGCATCTCTGATTCTCTGCAGGTTCCTGAACTTAGTCCAGGAGAA
GTATCCTGAGACAACCCTGTCTCCAGGCTGGACCACCCTTTACCTGCCCCAGTTGCCGAA
TGGGACATACAGCCGAGCCATGGTGGAGAAGATGCAGGAGCTAGTGGGACCAGTGCCACA
GAGGGTCACCTTCCCTGTGCGGGCTGTCATGGTGCGGGCTGCCTGGCCCCACTTCAGCTG
GTTGCTGGGCCAATCTGAGAGGTATAGCCTGACGCTGTGGCAGAGCGCCTCAGACCCCCT
GCTGGTGGACGATCTCCTCTACGTCCGGGACAACACTGCTGCTCACCAGATCTACTACGA
CATCTTTGAGCCGCTCCTGTCGCAGTTCAAGCAGCTCGCCGCGAATACCTCACGAAAGCA
AAGCTACTACACCGGGGGCAGCCTGGTCCCTCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCGAATGTTTATTATGCGTCACAGGATCTAGTTGTTACGTACTATTTAACTCTTACA
ATGAGGATGAGGTAGGTAAATTTTCATTTTATTAATACAGGAACTATCTCACTGAAGCTA
ATGACCCGCCTGAGTCTAGTAATCGGCAGAGCAGAGACTCAGAGGCAGGCCTTTCTGATT
CTACCCCCCGTGCTTTTTTCACCATCCATCCTTCCATCCATCTATCCAGCCAGCCAGCCA
GCAACCCATCTAGCCGGCATTTATCTTGATTCTCAAACTGAGATGCACGTAGAAAAGCAG
GAGTTGGAAAATATAGTCAGTGGCCCAAGATAAATACGATGCATCTTCTTGGAGTGATTT
TACTCAATAGTTCAGGAAGAGGGAGAAGGTAACTTTATTTGCCTATTAAAATCTGCATCA
GGGCAAAATTTGAATGCAATTTTAAAATAAAATCTAAAAGTCCAGAGATCCATGCCTAGG
GCTCTGGATTATGTTCTCTGTCCATGGGGGTGTTTAAGAAGCCCTGCGCTGCCTGAAAGG
ATGCCAGCTTTGAGAACCAAAGAGGTTGGGTGAGCCACCAAGGTCACAAAGTCAGGACCC
AAATCCAGATGTCCCTGACTCCAAAGTCCATGCCCTGCTGGGGGACTCTGACCTTATGTC
CTAGATGCCATAGGCCCTGCCTCTTCTTAGCACCATGATGGGAACTCAGGAAATGAGGCG
GGGACTCTAAAAATCAGCATCTCTGATTCTCTGCAGGTTCCTGAACTTAGTCCAGGAGAA
GTATCCTGAGACAACCCTGTCTCCAGGCTGGACCACCCTTTACCTGCCCCAGTTGCCGAA
TGGGACATACAGCCGAGCCATGGTGGAGAAGATGCAGGAGCTAGTGGGACCAGTGCCACA
GAGGGTCACCTTCCCTGTGCGGGCTGTCATGGTGCGGGCTGCCTGGCCCCACTTCAGCTG
GTTGCTGGGCCAATCTGAGAGGTATAGCCTGACGCTGTGGCAGAGCGCCTCAGACCCCCT
GCTGGTGGACGATCTCCTCTACGTCCGGGACAACACTGCTGCTCACCAGATCTACTACGA
CATCTTTGAGCCGCTCCTGTCGCAGTTCAAGCAGCTCGCCGCGAATACCTCACGAAAGCA
AAGCTACTACACCGGGGGCAGCCTGGTCCCTCTTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               30-651, gnl|bosTau2|chr3 (60553171-60553821)
               

               
               30-651, gnl|Hg17|chr1 (54791725-54790553)
               

               
               30-651, gnl|Mm7|chr4 (106121032-106121774)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-651, gnl|bosTau2|chr3 (60553171-60553821)
               

               
               30-651, gnl|Hg17|chr1 (54791725-54790553)
               

               
               30-651, gnl|Mm7|chr4 (106121032-106121774)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               elu (0.385356)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

	30-651, gnl\|bosTau2\|chr3 (60553171-60553821)
	30-651, gnl\|Hg17\|chr1 (54791725-54790553)
	30-651, gnl\|Mm7\|chr4 (106121032-106121774)

	elu (0.385356)
	mas (0.210305)
	aor (0.195274)
	sto (0.179824)
	fbs (0.175346)
	duo (0.172801)
	fhi (0.169578)
	cki (0.165235)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	eje (0.0988338)