Ss1.1-rduo405b_d12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATACGCGGCGGCCGGCGGCAGGCAGCTTGTAGTGAGGCCTTGAGAGCAGAGGAAAGCT GTTCACGGGTGAGAGGAACATCTCGAGTGAGCGAAGAGGTTCGCGGCCCGACTGGTGGGC TCCGCGGTGGTGGAGGCATCGGAAAGAACTTCGAGTGCCCCAGGGCAGTGCGACCCCCTT ACTTCTGCACCCTCAGCGGTGCGATTCCCCGCCTTCCGCGCCCTTCAACGGGGCGACCCC CTTCCTTCCGCGCCTCTCAGCCTCGGCGGAGTGGTTAAAGTGAGCAAACAATGGCCACTA ATCACAAACCTTCAGCAGCTCGCCCTGTTTCACGAGGTGGCATTGGACTGACAGGAAGGC CTCCTTCTGGAATACGACCCTCATCAGGAAATATTCGAGTGGCAACTGGAATACCACCTG GAACAGCAAGACCAGGCTCTCGTGGTGGTCCTGTAGGGATAGGAGGAGTTCTGTCTTCTC AGATCAAAGTTGCTGATCGTCCTGTAACGCAACAAGGTTTGAGTGGAATGAAAACTGGGA TGAAAGGTCCCCAGAGGCAAATTTTAGACAAATCTTATTATCTTGGGCTTCTTCGAAGTA AAATAAGTGAACTTACAACAGAAATTAATAAACTTCAAAAAGAAATAGAAATGTACAATC AAGAGAATTCAGTATATTTGTCATATGAAAAGAGAGAAGTAATTTTGCAGTTAAAATATG CAAGGTATTTTCTTATTATTAGTAACATTTAATGTAATATGTTTCAAGAGTTTAATACTA AATTTTTAGTTAAAGTAATGAATGATTACAACATGCTTAAAGCTCAAAATGATCGAGAAA CGCAAAGTATGGATGTTATATTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATACGCGGCGGCCGGCGGCAGGCAGCTTGTAGTGAGGCCTTGAGAGCAGAGGAAAGCT GTTCACGGGTGAGAGGAACATCTCGAGTGAGCGAAGAGGTTCGCGGCCCGACTGGTGGGC TCCGCGGTGGTGGAGGCATCGGAAAGAACTTCGAGTGCCCCAGGGCAGTGCGACCCCCTT ACTTCTGCACCCTCAGCGGTGCGATTCCCCGCCTTCCGCGCCCTTCAACGGGGCGACCCC CTTCCTTCCGCGCCTCTCAGCCTCGGCGGAGTGGTTAAAGTGAGCAAACAATGGCCACTA ATCACAAACCTTCAGCAGCTCGCCCTGTTTCACGAGGTGGCATTGGACTGACAGGAAGGC CTCCTTCTGGAATACGACCCTCATCAGGAAATATTCGAGTGGCAACTGGAATACCACCTG GAACAGCAAGACCAGGCTCTCGTGGTGGTCCTGTAGGGATAGGAGGAGTTCTGTCTTCTC AGATCAAAGTTGCTGATCGTCCTGTAACGCAACAAGGTTTGAGTGGAATGAAAACTGGGA TGAAAGGTCCCCAGAGGCAAATTTTAGACAAATCTTATTATCTTGGGCTTCTTCGAAGTA AAATAAGTGAACTTACAACAGAAATTAATAAACTTCAAAAAGAAATAGAAATGTACAATC AAGAGAATTCAGTATATTTGTCATATGAAAAGAGAGAAGTAATTTTGCAGTTAAAATATG CAAGGTATTTTCTTATTATTAGTAACATTTAATGTAATATGTTTCAAGAGTTTAATACTA AATTTTTAGTTAAAGTAATGAATGATTACAACATGCTTAAAGCTCAAAATGATCGAGAAA CGCAAAGTATGGATGTTATATTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 37-198, gnl|bosTau2|chr8 (10646985-10646824) | |
| 37-198, gnl|canFam2|chr11 (48189681-48190358) | |
| 37-198, gnl|dasNov1|scaffold_2882 (121601-122208) | |
| 37-198, gnl|echTel1|scaffold_314018 (3686-4385) | |
| 37-198, gnl|hg17|chr9 (26946329-26946991) | |
| 37-198, gnl|loxAfr1|scaffold_7274 (60528-61229) | |
| 37-198, gnl|mm7|chr4 (94007042-94007654) | |
| 37-198, gnl|oryCun1|scaffold_166125 (4332-3657) | |
| 37-198, gnl|panTro1|chr11 (27476690-27477355) | |
| 37-198, gnl|rheMac2|chr15 (50148382-50147707) | |
| 37-198, gnl|rn3|chr5 (114918492-114919087) | |
| 270-409, gnl|bosTau2|chr8 (10641924-10641785) | |
| 270-409, gnl|canFam2|chr11 (48192290-48192466) | |
| 270-409, gnl|dasNov1|scaffold_2882 (125744-125927) | |
| 270-409, gnl|echTel1|scaffold_314018 (6197-6372) | |
| 270-409, gnl|galGal2|chrZ_random (2625748-2625893) | |
| 270-409, gnl|hg17|chr9 (26951926-26952118) | |
| 270-409, gnl|Hg17|chr9 (26951945-26952084) | |
| 270-409, gnl|mm7|chr4 (94010551-94010720) | |
| 270-409, gnl|Mm7|chr4 (94010571-94010706) | |
| 270-409, gnl|monDom2|scaffold_19 (24813986-24814179) | |
| 270-409, gnl|oryCun1|scaffold_195641 (422-595) | |
| 270-409, gnl|panTro1|chr11 (27482280-27482472) | |
| 270-409, gnl|rheMac2|chr15 (50143019-50142827) | |
| 270-409, gnl|rn3|chr5 (114921935-114922093) | |
| 411-548, gnl|bosTau2|chr8 (10640542-10640405) | |
| 411-548, gnl|Hg17|chr9 (26968126-26968263) | |
| 411-548, gnl|Mm7|chr4 (94014460-94014597) | |
| 592-794, gnl|bosTau2|chr8 (10634108-10633906) | |
| 592-794, gnl|canFam2|chr11 (48200981-48201108) | |
| 592-794, gnl|dasNov1|scaffold_229852 (153-248) | |
| 592-794, gnl|echTel1|scaffold_298697 (75504-75630) | |
| 592-794, gnl|fr1|chrUn (117119770-117119908) | |
| 592-794, gnl|galGal2|chrZ_random (2628787-2628912) | |
| 592-794, gnl|hg17|chr9 (26974252-26974368) | |
| 592-794, gnl|Hg17|chr9 (26974251-26974418) | |
| 592-794, gnl|mm7|chr4 (94019580-94019706) | |
| 592-794, gnl|Mm7|chr4 (94019579-94019795) | |
| 592-794, gnl|monDom2|scaffold_19 (24822440-24822555) | |
| 592-794, gnl|oryCun1|scaffold_195641 (7710-7836) | |
| 592-794, gnl|panTro1|chr11 (27504501-27504617) | |
| 592-794, gnl|rheMac2|chr15 (50122112-50121996) | |
| 592-794, gnl|rn3|chr5 (114935005-114935131) | |
| 592-794, gnl|tetNig1|chrUn_random (105100822-105100697) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-198, gnl|bosTau2|chr8 (10646985-10646824) | |
| 37-198, gnl|canFam2|chr11 (48189681-48190358) | |
| 37-198, gnl|dasNov1|scaffold_2882 (121601-122208) | |
| 37-198, gnl|echTel1|scaffold_314018 (3686-4385) | |
| 37-198, gnl|hg17|chr9 (26946329-26946991) | |
| 37-198, gnl|loxAfr1|scaffold_7274 (60528-61229) | |
| 37-198, gnl|mm7|chr4 (94007042-94007654) | |
| 37-198, gnl|oryCun1|scaffold_166125 (4332-3657) | |
| 37-198, gnl|panTro1|chr11 (27476690-27477355) | |
| 37-198, gnl|rheMac2|chr15 (50148382-50147707) | |
| 37-198, gnl|rn3|chr5 (114918492-114919087) | |
| 270-409, gnl|bosTau2|chr8 (10641924-10641785) | |
| 270-409, gnl|canFam2|chr11 (48192290-48192466) | |
| 270-409, gnl|dasNov1|scaffold_2882 (125744-125927) | |
| 270-409, gnl|echTel1|scaffold_314018 (6197-6372) | |
| 270-409, gnl|galGal2|chrZ_random (2625748-2625893) | |
| 270-409, gnl|hg17|chr9 (26951926-26952118) | |
| 270-409, gnl|Hg17|chr9 (26951945-26952084) | |
| 270-409, gnl|mm7|chr4 (94010551-94010720) | |
| 270-409, gnl|Mm7|chr4 (94010571-94010706) | |
| 270-409, gnl|monDom2|scaffold_19 (24813986-24814179) | |
| 270-409, gnl|oryCun1|scaffold_195641 (422-595) | |
| 270-409, gnl|panTro1|chr11 (27482280-27482472) | |
| 270-409, gnl|rheMac2|chr15 (50143019-50142827) | |
| 270-409, gnl|rn3|chr5 (114921935-114922093) | |
| 411-548, gnl|bosTau2|chr8 (10640542-10640405) | |
| 411-548, gnl|Hg17|chr9 (26968126-26968263) | |
| 411-548, gnl|Mm7|chr4 (94014460-94014597) | |
| 592-794, gnl|bosTau2|chr8 (10634108-10633906) | |
| 592-794, gnl|canFam2|chr11 (48200981-48201108) | |
| 592-794, gnl|dasNov1|scaffold_229852 (153-248) | |
| 592-794, gnl|echTel1|scaffold_298697 (75504-75630) | |
| 592-794, gnl|fr1|chrUn (117119770-117119908) | |
| 592-794, gnl|galGal2|chrZ_random (2628787-2628912) | |
| 592-794, gnl|hg17|chr9 (26974252-26974368) | |
| 592-794, gnl|Hg17|chr9 (26974251-26974418) | |
| 592-794, gnl|mm7|chr4 (94019580-94019706) | |
| 592-794, gnl|Mm7|chr4 (94019579-94019795) | |
| 592-794, gnl|monDom2|scaffold_19 (24822440-24822555) | |
| 592-794, gnl|oryCun1|scaffold_195641 (7710-7836) | |
| 592-794, gnl|panTro1|chr11 (27504501-27504617) | |
| 592-794, gnl|rheMac2|chr15 (50122112-50121996) | |
| 592-794, gnl|rn3|chr5 (114935005-114935131) | |
| 592-794, gnl|tetNig1|chrUn_random (105100822-105100697) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| ski (0.146735) | |
| kid (0.129735) |