Non-Coding RNA Search

Ss1.1-rduo405b_j10.5

Sequence:


               
               CGAGTTTTTTTTTTTTTTTTTTGGCCATGCCCAAAGCATGCAGAAGTTCCTCAGCCAGGG
ATCAAACCAGAGCCAGTAACCCAAGCCACAACAGTGGCAATGCCATGTCCTTAACCACTA
GGCCAACAGGGAAATCCCTCTATTTTCATTGAGAGGCATGGCCATCCCCTAAGTGGGAGG
TTTGGAATAGAGATGGTAAAAATA------------------------------------
------------------------GAATATGGGTTTGATCCCTGGCCTTGTTCGGTGGGT
TAGGAGCCTGCATTGCCATGAGCTGGGGTGTAGGTCTCAGACACGATGCGGATCTGGCAT
TGCTGTGGCCATGGTGTAGGCCCTCGTGCCGAATTCGGCACGAGGACACATTCAGCTAAC
GTATTTTAGCAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAAT
GTACTGTGCCCCAGAGGTTGGAGCGATCACAGAAGAAACCGAAGCCTGTGATTGGTGGAG
TTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAGACTTTGGTTGAGTGCCATCCAGC
AGGAATAAATACCCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTTTTTTTTTTTTTTTTTTGGCCATGCCCAAAGCATGCAGAAGTTCCTCAGCCAGGG
ATCAAACCAGAGCCAGTAACCCAAGCCACAACAGTGGCAATGCCATGTCCTTAACCACTA
GGCCAACAGGGAAATCCCTCTATTTTCATTGAGAGGCATGGCCATCCCCTAAGTGGGAGG
TTTGGAATAGAGATGGTAAAAATA------------------------------------
------------------------GAATATGGGTTTGATCCCTGGCCTTGTTCGGTGGGT
TAGGAGCCTGCATTGCCATGAGCTGGGGTGTAGGTCTCAGACACGATGCGGATCTGGCAT
TGCTGTGGCCATGGTGTAGGCCCTCGTGCCGAATTCGGCACGAGGACACATTCAGCTAAC
GTATTTTAGCAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAAT
GTACTGTGCCCCAGAGGTTGGAGCGATCACAGAAGAAACCGAAGCCTGTGATTGGTGGAG
TTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAGACTTTGGTTGAGTGCCATCCAGC
AGGAATAAATACCCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823697|ref|XP_605264.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823697|ref|XP_605264.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               343-444, gnl|bosTau2|chr16 (52436731-52436632)
               

               
               343-444, gnl|Hg17|chr1 (209804305-209804404)
               

               
               343-444, gnl|Mm7|chr1 (190352249-190352150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               343-444, gnl|bosTau2|chr16 (52436731-52436632)
               

               
               343-444, gnl|Hg17|chr1 (209804305-209804404)
               

               
               343-444, gnl|Mm7|chr1 (190352249-190352150)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               sug (0.127291)

	343-444, gnl\|bosTau2\|chr16 (52436731-52436632)
	343-444, gnl\|Hg17\|chr1 (209804305-209804404)
	343-444, gnl\|Mm7\|chr1 (190352249-190352150)