Non-Coding RNA Search

Ss1.1-rduo406b_l22.5

Sequence:


               
               CGCGGACCCAGCTGCGCTCCCGGCTGTCTCGGCGCCCCGGACCCGGTCATTAACAAGTAG
GTTGTTCTGAAAATAAAGACCTCAGAGGGACGCGCTCCGGTGGTGTCAAGTCTGAAGGCA
GAGCTGGTTGCACTTTTCTCTTAGAAAGTTCAGTCTCTGGCTGTGAAACCCTGCCACTCA
GGATGATCCTGTCGAATGCCACGGCCGTGACGCCCTTTCTGACCAAGCTGTGGCAGGGGA
CAGTACAACAGGGCAGCAACACGTCTGGCCTGGCCCGCAGGTCCCCAGGCCATGATGACG
GCAAGCTGGCGGCTCTCTACATTCTCATGGTGCTGGGCTTTTTTGGTTTCTTCACCCTGG
GCATCATGCTCAGTTACATCCGCTCCAAGAAGCTGGAGCACTCCCACGACCCTTACAACG
TGTACATCCAGTCTGACAGCTGGCAGGAGAAGGACAAGGCTTACTTTCAGGCCCGGGTTC
TGGAGAACTGCAGGGCGTGTTATGTCATTGAAAACCAGCTGGCCGTGGAACGACCCAGTG
TCTACCTTCCGGAGATGAAGCGTTTGTCATAACCCCGTGGCCGGTTAAAACTGGACAAAG
CCTCCTTGACGATCTGCTTTTTCTTATCCTTATAGTCTTTATTGTACGGATATAACCGTT
TTCGGCTTTTTTTTTTTTTTTTTTTCTATTGGGAGGGGTGGATTATTAACACGCTGTTTC
TAAGATCACATTCCTTCTGTAATAGACTGGCCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGACCCAGCTGCGCTCCCGGCTGTCTCGGCGCCCCGGACCCGGTCATTAACAAGTAG
GTTGTTCTGAAAATAAAGACCTCAGAGGGACGCGCTCCGGTGGTGTCAAGTCTGAAGGCA
GAGCTGGTTGCACTTTTCTCTTAGAAAGTTCAGTCTCTGGCTGTGAAACCCTGCCACTCA
GGATGATCCTGTCGAATGCCACGGCCGTGACGCCCTTTCTGACCAAGCTGTGGCAGGGGA
CAGTACAACAGGGCAGCAACACGTCTGGCCTGGCCCGCAGGTCCCCAGGCCATGATGACG
GCAAGCTGGCGGCTCTCTACATTCTCATGGTGCTGGGCTTTTTTGGTTTCTTCACCCTGG
GCATCATGCTCAGTTACATCCGCTCCAAGAAGCTGGAGCACTCCCACGACCCTTACAACG
TGTACATCCAGTCTGACAGCTGGCAGGAGAAGGACAAGGCTTACTTTCAGGCCCGGGTTC
TGGAGAACTGCAGGGCGTGTTATGTCATTGAAAACCAGCTGGCCGTGGAACGACCCAGTG
TCTACCTTCCGGAGATGAAGCGTTTGTCATAACCCCGTGGCCGGTTAAAACTGGACAAAG
CCTCCTTGACGATCTGCTTTTTCTTATCCTTATAGTCTTTATTGTACGGATATAACCGTT
TTCGGCTTTTTTTTTTTTTTTTTTTCTATTGGGAGGGGTGGATTATTAACACGCTGTTTC
TAAGATCACATTCCTTCTGTAATAGACTGGCCATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7243716|gb|AAF43426.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7243716|gb|AAF43426.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               136-749, gnl|bosTau2|chr14 (27596601-27595991)
               

               
               136-749, gnl|Hg17|chr21 (34743849-34743227)
               

               
               136-749, gnl|Mm7|chr16 (92401498-92400921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-749, gnl|bosTau2|chr14 (27596601-27595991)
               

               
               136-749, gnl|Hg17|chr21 (34743849-34743227)
               

               
               136-749, gnl|Mm7|chr16 (92401498-92400921)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               duo (0.864006)
               

               
               cje (0.495704)
               

               
               hea (0.408998)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.864006)
               

               
               cje (0.495704)
               

               
               hea (0.408998)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)

	136-749, gnl\|bosTau2\|chr14 (27596601-27595991)
	136-749, gnl\|Hg17\|chr21 (34743849-34743227)
	136-749, gnl\|Mm7\|chr16 (92401498-92400921)

	duo (0.864006)
	cje (0.495704)
	hea (0.408998)
	hlv (0.139256)
	che (0.136314)
	ute (0.132784)