Non-Coding RNA Search

Ss1.1-rduo408b_k10.5

Sequence:


               
               CAGCTGCTGATGTTGGGCCCCTTCCAGTATGCCTTCTTGAAGATAGCACTGACCCTGGTG
GGCCTGTTTCTCATCCCTGACGGCATCTATATCCCAGCAGACATTTCTGAGGAGAGCGCT
GCTCTATGGATCAACACTTTCCTCGCTGTGTCCACCCTCTTGGCTCTGTGGGCCCTGGGC
ATCATTTTCCGTCAAGCCAAGCTGCACCTGGGTGAGCAGAACATAGGAGCCAAGTTTGCT
CTATTCCAGGTGCTCCTTATTCTGACTGCCCTGCAGCCAGCCATCTTCTCAGTTTTGGCC
AATGGCGGGCAGATTGCTTGTTCGCCTCCCTTTTCCTCTAAAATCAGATCTCAAGTGATG
AACTGCCACCTCCTCATCCTGGAGACTTTTCTGTTAACCGTGCTGACACGAATGTACTAC
CGAAAGAAAGATGACAAGGTTGGATATGAAACTTTCTCTTCTCCAGACCTGGATATGAAC
CTCAAAGCCTGAGGTGGATGGCTTGGGCAGTGAAAGACACATAGTACTCATTAGACGGGT
ACAAGATTTCCTTATAGTCCTTCAATCTTGACCAACTGGGGATGGATTCCATTGTCAGCA
TGAGCTGGCAGATTATGGATACTGGATCATAGAGATGAAGGTGAACTATGCAATAGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGCTGATGTTGGGCCCCTTCCAGTATGCCTTCTTGAAGATAGCACTGACCCTGGTG
GGCCTGTTTCTCATCCCTGACGGCATCTATATCCCAGCAGACATTTCTGAGGAGAGCGCT
GCTCTATGGATCAACACTTTCCTCGCTGTGTCCACCCTCTTGGCTCTGTGGGCCCTGGGC
ATCATTTTCCGTCAAGCCAAGCTGCACCTGGGTGAGCAGAACATAGGAGCCAAGTTTGCT
CTATTCCAGGTGCTCCTTATTCTGACTGCCCTGCAGCCAGCCATCTTCTCAGTTTTGGCC
AATGGCGGGCAGATTGCTTGTTCGCCTCCCTTTTCCTCTAAAATCAGATCTCAAGTGATG
AACTGCCACCTCCTCATCCTGGAGACTTTTCTGTTAACCGTGCTGACACGAATGTACTAC
CGAAAGAAAGATGACAAGGTTGGATATGAAACTTTCTCTTCTCCAGACCTGGATATGAAC
CTCAAAGCCTGAGGTGGATGGCTTGGGCAGTGAAAGACACATAGTACTCATTAGACGGGT
ACAAGATTTCCTTATAGTCCTTCAATCTTGACCAACTGGGGATGGATTCCATTGTCAGCA
TGAGCTGGCAGATTATGGATACTGGATCATAGAGATGAAGGTGAACTATGCAATAGGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20810346|gb|AAH29606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20810346|gb|AAH29606.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               60-251, gnl|bosTau2|chr1 (42232593-42232782)
               

               
               60-251, gnl|Hg17|chr3 (197445057-197445244)
               

               
               60-251, gnl|Mm7|chr16 (32151873-32151690)
               


               
               354-660, gnl|bosTau2|chr1 (42235216-42235521)
               

               
               354-660, gnl|Hg17|chr3 (197448242-197448538)
               

               
               354-660, gnl|Mm7|chr16 (32150405-32150109)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-251, gnl|bosTau2|chr1 (42232593-42232782)
               

               
               60-251, gnl|Hg17|chr3 (197445057-197445244)
               

               
               60-251, gnl|Mm7|chr16 (32151873-32151690)
               


               
               354-660, gnl|bosTau2|chr1 (42235216-42235521)
               

               
               354-660, gnl|Hg17|chr3 (197448242-197448538)
               

               
               354-660, gnl|Mm7|chr16 (32150405-32150109)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               duo (0.691204)
               

               
               cje (0.330469)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               cki (0.165235)
               

               
               nco (0.161734)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.691204)
               

               
               cje (0.330469)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               cki (0.165235)
               

               
               nco (0.161734)

	60-251, gnl\|bosTau2\|chr1 (42232593-42232782)
	60-251, gnl\|Hg17\|chr3 (197445057-197445244)
	60-251, gnl\|Mm7\|chr16 (32151873-32151690)

	354-660, gnl\|bosTau2\|chr1 (42235216-42235521)
	354-660, gnl\|Hg17\|chr3 (197448242-197448538)
	354-660, gnl\|Mm7\|chr16 (32150405-32150109)

	duo (0.691204)
	cje (0.330469)
	jej (0.197844)
	col (0.195008)
	cki (0.165235)
	nco (0.161734)