Non-Coding RNA Search

Ss1.1-rduo410b_a14.5

Sequence:


               
               GGAAGAGGGACAGCTGTGGTGCCCTCTTGCTGGGGCTGCCATCTTAAAAATCTGAGTGCA
ATAGGGTTTGATTATAACAGTTATTTCAGGATATCTTGTTTGCTTAGCCACTATAGAACA
GGTTTTTATTTTTAAATGTCCTCAGCATTGCAGAAAATACCATTTATAATAGCAAGTATA
GGCTAAAGGCTCAGTTCCGCTGGACTTCAAATGGCTGGCAAGGGTGGCTCTCATTCCAAA
GTTGGAAGGCTCGTTTCTGAAAAGCAACCTAGGTGTGTCCGTTGGGACCCAGGCCTCACC
ATCAGGAGTCCTGGAGGAAACTTCCAAATGGGAGACATGGTAGTTGAATAGTTGTCTGAT
CAAGCCAAATAATTCTCACTGTCCCAGCCAACAAACCCACTTTTATGATCAGCCTCTTCT
GCAGCTGGGCTTAACTCTGAATTTCACCGGCAGGTGTATGGTTGAGGGAGGGTTCCTAAT
AAGGCTGGAGACTGGCATTCCAGAGCTGCTTGGTTGGAGGAAGTAATAAAGTTGGCTAAA
TGCTAGGAGCTGGTCTCCACATGTTGCCGCCTGTCTATCACCACTCTGATACTAGAAGCA
ACCAGAAAAAGCTGCAGGGATGGTGGACAAAGAAACTATGGCTGTTTTTGCTTTTGTGTG
GCAACAAAGCAGTTATAGGGTGCGTTAAAGGGATTGCAGTGGGGCCAAGGACTCAACCTC
AGCCACAGGCAAACTTGCACATAACTCATCCCCCTCTCATGGGGTATGGGAGGGCCTGTA
TTGATCTTGGACTTGTCATCCTGGGGCAGTTTTAGTTCTTTATGTTTAGTGGGTTAGTGT
CAAGTGCTACCACTTCCCAGTAAAGGAAAAGGGACTTGGTCTCTGGGTCCCCAGCCGCCT
TCATTGGTGGGGGTTTTTTTTGATATTGTTACTCTGAGCAAAACTGCTTTGGAAGAGCTG
CTTTTAGGGATTACCTTTCAAATACCCCAGGGTGGGGAATAGGGTTCTCCTCAAAGCCTC
ACAACCAAGATCATAGGAAAGGGGCCCTACCTTCCTGCTGCTTCACAGCTCAGAACATGT
ACTGAATGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAGGGACAGCTGTGGTGCCCTCTTGCTGGGGCTGCCATCTTAAAAATCTGAGTGCA
ATAGGGTTTGATTATAACAGTTATTTCAGGATATCTTGTTTGCTTAGCCACTATAGAACA
GGTTTTTATTTTTAAATGTCCTCAGCATTGCAGAAAATACCATTTATAATAGCAAGTATA
GGCTAAAGGCTCAGTTCCGCTGGACTTCAAATGGCTGGCAAGGGTGGCTCTCATTCCAAA
GTTGGAAGGCTCGTTTCTGAAAAGCAACCTAGGTGTGTCCGTTGGGACCCAGGCCTCACC
ATCAGGAGTCCTGGAGGAAACTTCCAAATGGGAGACATGGTAGTTGAATAGTTGTCTGAT
CAAGCCAAATAATTCTCACTGTCCCAGCCAACAAACCCACTTTTATGATCAGCCTCTTCT
GCAGCTGGGCTTAACTCTGAATTTCACCGGCAGGTGTATGGTTGAGGGAGGGTTCCTAAT
AAGGCTGGAGACTGGCATTCCAGAGCTGCTTGGTTGGAGGAAGTAATAAAGTTGGCTAAA
TGCTAGGAGCTGGTCTCCACATGTTGCCGCCTGTCTATCACCACTCTGATACTAGAAGCA
ACCAGAAAAAGCTGCAGGGATGGTGGACAAAGAAACTATGGCTGTTTTTGCTTTTGTGTG
GCAACAAAGCAGTTATAGGGTGCGTTAAAGGGATTGCAGTGGGGCCAAGGACTCAACCTC
AGCCACAGGCAAACTTGCACATAACTCATCCCCCTCTCATGGGGTATGGGAGGGCCTGTA
TTGATCTTGGACTTGTCATCCTGGGGCAGTTTTAGTTCTTTATGTTTAGTGGGTTAGTGT
CAAGTGCTACCACTTCCCAGTAAAGGAAAAGGGACTTGGTCTCTGGGTCCCCAGCCGCCT
TCATTGGTGGGGGTTTTTTTTGATATTGTTACTCTGAGCAAAACTGCTTTGGAAGAGCTG
CTTTTAGGGATTACCTTTCAAATACCCCAGGGTGGGGAATAGGGTTCTCCTCAAAGCCTC
ACAACCAAGATCATAGGAAAGGGGCCCTACCTTCCTGCTGCTTCACAGCTCAGAACATGT
ACTGAATGGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               809-1006, + strand, RNAz p=0.999908

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               809-1006, + strand, RNAz p=0.999908

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               924-982, + strand, RNAmicro p=0.983685

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               924-982, + strand, RNAmicro p=0.983685

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_033631, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_033631, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr2 (83133433-83134536)
               

               
               1-1092, gnl|Hg17|chr1 (23158229-23157139)
               

               
               1-1092, gnl|Mm7|chr4 (135926360-135927362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr2 (83133433-83134536)
               

               
               1-1092, gnl|Hg17|chr1 (23158229-23157139)
               

               
               1-1092, gnl|Mm7|chr4 (135926360-135927362)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

	1-1092, gnl\|bosTau2\|chr2 (83133433-83134536)
	1-1092, gnl\|Hg17\|chr1 (23158229-23157139)
	1-1092, gnl\|Mm7\|chr4 (135926360-135927362)