Ss1.1-rduo410b_d13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTTCTCTGACTGCCTCCACACGTCACAAACATGATGCTGCCTTCCATGAGCCTGCCCA GCCTGTCCTGGATGCTGCTGTCCTGCCTGATGCTCCTGTCTCAGGTCCAAGGTGAAGATT CCCCAGCAGACATGCCCTCTGCACGGATCAGCTGTCCCAAAGGCTCCATGGCCTATGCTT CCTACTGCTATGCCTTGTTTATAACACCCAAAACCTGGATGGATGCAGACATGGCCTGCC AGAAGCGGCCCTCAGGACACCTCGCATCTGTGCTCAGTGGGGCTGAGGCATCCTTCGTGT CCTCCCTGATCAAGAACAATTTGAACGCCCTCTCAGACGTCTGGATTGGGCTCCACGACC CCACTGAGGGCTTGGAGCCCAATGCTGGTGGATGGGAGTGGAGTAGCTCTGATGTGCTCA ATTACGTTGCCTGGGAGAGAAACCCCTCCACCAGCTCATACCCTGGCTACTGCGGGAGCC TGTCAAGAAACACAGGATATCTGAAATGGAGAGATTATAACTGCTATGTGAATTTACCCT ATGTCTGCAAGTTCAAGGACTAGGTCAGAGAGGATGTCAGCTTCCTGATTCTGCTGCGAA GCTCCTCATGGACTTGGAACCAATTGTGAAAACCCAACTCGGAATGGGATTTTCACCCCA TGACCCCAACCTGACTACTTTCCCCTAGCTTCCCCTCCTCCCAGCCTTGTTTAGGCTTTT TGGTTTCTTCCCTAACCTGAGTTTTCCAGATACAATAAAAAAAATAATTCTTCAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTTCTCTGACTGCCTCCACACGTCACAAACATGATGCTGCCTTCCATGAGCCTGCCCA GCCTGTCCTGGATGCTGCTGTCCTGCCTGATGCTCCTGTCTCAGGTCCAAGGTGAAGATT CCCCAGCAGACATGCCCTCTGCACGGATCAGCTGTCCCAAAGGCTCCATGGCCTATGCTT CCTACTGCTATGCCTTGTTTATAACACCCAAAACCTGGATGGATGCAGACATGGCCTGCC AGAAGCGGCCCTCAGGACACCTCGCATCTGTGCTCAGTGGGGCTGAGGCATCCTTCGTGT CCTCCCTGATCAAGAACAATTTGAACGCCCTCTCAGACGTCTGGATTGGGCTCCACGACC CCACTGAGGGCTTGGAGCCCAATGCTGGTGGATGGGAGTGGAGTAGCTCTGATGTGCTCA ATTACGTTGCCTGGGAGAGAAACCCCTCCACCAGCTCATACCCTGGCTACTGCGGGAGCC TGTCAAGAAACACAGGATATCTGAAATGGAGAGATTATAACTGCTATGTGAATTTACCCT ATGTCTGCAAGTTCAAGGACTAGGTCAGAGAGGATGTCAGCTTCCTGATTCTGCTGCGAA GCTCCTCATGGACTTGGAACCAATTGTGAAAACCCAACTCGGAATGGGATTTTCACCCCA TGACCCCAACCTGACTACTTTCCCCTAGCTTCCCCTCCTCCCAGCCTTGTTTAGGCTTTT TGGTTTCTTCCCTAACCTGAGTTTTCCAGATACAATAAAAAAAATAATTCTTCAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-127, gnl|bosTau2|chr11 (36810690-36810566) | |
| 2-127, gnl|canFam2|chr17 (47897673-47897501) | |
| 2-127, gnl|dasNov1|scaffold_1008 (99572-99385) | |
| 2-127, gnl|echTel1|scaffold_307149 (8745-8925) | |
| 2-127, gnl|hg17|chr2 (79226316-79226500) | |
| 2-127, gnl|Hg17|chr2 (79298222-79298096) | |
| 2-127, gnl|loxAfr1|scaffold_1755 (77898-78082) | |
| 2-127, gnl|mm7|chr6 (78444315-78444145) | |
| 2-127, gnl|Mm7|chr6 (78486502-78486381) | |
| 2-127, gnl|oryCun1|scaffold_177493 (104002-103828) | |
| 2-127, gnl|panTro1|chr12 (82032853-82033037) | |
| 2-127, gnl|rheMac2|chr13 (79484731-79484917) | |
| 2-127, gnl|rn3|chr4 (112630976-112630808) | |
| 226-369, gnl|bosTau2|chr11 (36809706-36809563) | |
| 226-369, gnl|canFam2|chr17 (47898703-47898503) | |
| 226-369, gnl|dasNov1|scaffold_1008 (101378-101086) | |
| 226-369, gnl|echTel1|scaffold_307149 (7308-7605) | |
| 226-369, gnl|hg17|chr2 (79225096-79225386) | |
| 226-369, gnl|Hg17|chr2 (79297249-79297106) | |
| 226-369, gnl|loxAfr1|scaffold_1755 (76683-76976) | |
| 226-369, gnl|mm7|chr6 (78445407-78445131) | |
| 226-369, gnl|Mm7|chr6 (78485526-78485383) | |
| 226-369, gnl|monDom2|scaffold_61 (10329065-10328778) | |
| 226-369, gnl|oryCun1|scaffold_98604 (18248-18480) | |
| 226-369, gnl|panTro1|chr12 (82031634-82031924) | |
| 226-369, gnl|rheMac2|chr13 (79483527-79483817) | |
| 226-369, gnl|rn3|chr4 (112632533-112632249) | |
| 493-775, gnl|bosTau2|chr11 (36808551-36808257) | |
| 493-775, gnl|Hg17|chr2 (79296077-79295786) | |
| 493-775, gnl|Mm7|chr6 (78484463-78484191) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-127, gnl|bosTau2|chr11 (36810690-36810566) | |
| 2-127, gnl|canFam2|chr17 (47897673-47897501) | |
| 2-127, gnl|dasNov1|scaffold_1008 (99572-99385) | |
| 2-127, gnl|echTel1|scaffold_307149 (8745-8925) | |
| 2-127, gnl|hg17|chr2 (79226316-79226500) | |
| 2-127, gnl|Hg17|chr2 (79298222-79298096) | |
| 2-127, gnl|loxAfr1|scaffold_1755 (77898-78082) | |
| 2-127, gnl|mm7|chr6 (78444315-78444145) | |
| 2-127, gnl|Mm7|chr6 (78486502-78486381) | |
| 2-127, gnl|oryCun1|scaffold_177493 (104002-103828) | |
| 2-127, gnl|panTro1|chr12 (82032853-82033037) | |
| 2-127, gnl|rheMac2|chr13 (79484731-79484917) | |
| 2-127, gnl|rn3|chr4 (112630976-112630808) | |
| 226-369, gnl|bosTau2|chr11 (36809706-36809563) | |
| 226-369, gnl|canFam2|chr17 (47898703-47898503) | |
| 226-369, gnl|dasNov1|scaffold_1008 (101378-101086) | |
| 226-369, gnl|echTel1|scaffold_307149 (7308-7605) | |
| 226-369, gnl|hg17|chr2 (79225096-79225386) | |
| 226-369, gnl|Hg17|chr2 (79297249-79297106) | |
| 226-369, gnl|loxAfr1|scaffold_1755 (76683-76976) | |
| 226-369, gnl|mm7|chr6 (78445407-78445131) | |
| 226-369, gnl|Mm7|chr6 (78485526-78485383) | |
| 226-369, gnl|monDom2|scaffold_61 (10329065-10328778) | |
| 226-369, gnl|oryCun1|scaffold_98604 (18248-18480) | |
| 226-369, gnl|panTro1|chr12 (82031634-82031924) | |
| 226-369, gnl|rheMac2|chr13 (79483527-79483817) | |
| 226-369, gnl|rn3|chr4 (112632533-112632249) | |
| 493-775, gnl|bosTau2|chr11 (36808551-36808257) | |
| 493-775, gnl|Hg17|chr2 (79296077-79295786) | |
| 493-775, gnl|Mm7|chr6 (78484463-78484191) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| duo (14.6881) | |
| cje (13.0535) | |
| ill (1.75593) | |
| nje (0.49776) | |
| mas (0.210305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| sin (0.174948) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (14.6881) | |
| cje (13.0535) | |
| ill (1.75593) | |
| nje (0.49776) | |
| mas (0.210305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| sin (0.174948) |