Non-Coding RNA Search

Ss1.1-rduo410b_k8.5

Sequence:


               
               AGGGCCTGAAGTACTCATTCTCTGTGGACTGGTGGTCCTTCGGAGTCCTTCTCTATGAAA
TGCTCATCGGTCAGTCCCCCTTCCACGGTGATGATGAGGACGAACTCTTCGAGTCCATCC
GTGTGGACTCACCGTATTATCCCCGCTGGATCACTAGGGAGTCCAAGGACATCCTGGAGA
AGCTGCTTGAACGAGACACAGGCAAGAGGCTGGGAGTGACAGGGAACATCAGAACCCACC
CCTTCTTCAAGACCATCAACTGGACTCTGCTGGAGAAACGTGCAGTGGAGCCACCCTTCA
AGCCCAAAGTGAGGTCCCCTGGAGACTACAGCAACTTCGACCAGGAGTTCCTGAATGAGA
AGCCACGTCTCTCCTTCAGCGACAAGAATCTCATCGACTCCATGGACCAAACAGCATTTG
CTGGCTTCTCCTTCCTGAACCCCAAATTCGAGAGGCTCCTGGAAAATTGAGGTTCCCAGA
CATGCGCCACCCCTACCCCTACCCCAGCCAGGGAGCTTTGGGTCAGCCAGCTCCTTCTGC
CAACCCAGCCCAGCAGAACAGCCTGGGCCCCCCACTTCATCAGCACCTGCCCACCTCCCG
CCACGATAAGCAACAGTGTGATTGTCGTGATTTCTGCTGCTGCCCGCCTTCTTCGTCCCC
CATAAGGGACTTCAGCTCCTGTCTGGCTGGGCCTCTACGGTACTTCCTCTGTGAATTGTG
TGTGAATTTGCTTTTCCTCTGTCCTCAGAGGGAAACTGTAAATCCTGTGTTTCATTACTT
GAATGTAGTTATCTATGGAAAAAAAAATATTATATATATATATATATATATACATACACA
CACACACACGCACACACACACGCACACATATATATAATAGGCTGTATATATTGCTCATTG
GAGAAAAAACGTGGGGACTGGTGATATTGTTGATCTTTTAAAATATACATATTATATATA
CTATGTGCTCTCCCCCCTGCCCCCCGCCAAAAAAAAAAAAAAAAAAAAAGGGAGCACAAG
CTGTTCGAACCAGTAGGTTCTTTTATTTGTGTGTCTAAATAAACAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCCTGAAGTACTCATTCTCTGTGGACTGGTGGTCCTTCGGAGTCCTTCTCTATGAAA
TGCTCATCGGTCAGTCCCCCTTCCACGGTGATGATGAGGACGAACTCTTCGAGTCCATCC
GTGTGGACTCACCGTATTATCCCCGCTGGATCACTAGGGAGTCCAAGGACATCCTGGAGA
AGCTGCTTGAACGAGACACAGGCAAGAGGCTGGGAGTGACAGGGAACATCAGAACCCACC
CCTTCTTCAAGACCATCAACTGGACTCTGCTGGAGAAACGTGCAGTGGAGCCACCCTTCA
AGCCCAAAGTGAGGTCCCCTGGAGACTACAGCAACTTCGACCAGGAGTTCCTGAATGAGA
AGCCACGTCTCTCCTTCAGCGACAAGAATCTCATCGACTCCATGGACCAAACAGCATTTG
CTGGCTTCTCCTTCCTGAACCCCAAATTCGAGAGGCTCCTGGAAAATTGAGGTTCCCAGA
CATGCGCCACCCCTACCCCTACCCCAGCCAGGGAGCTTTGGGTCAGCCAGCTCCTTCTGC
CAACCCAGCCCAGCAGAACAGCCTGGGCCCCCCACTTCATCAGCACCTGCCCACCTCCCG
CCACGATAAGCAACAGTGTGATTGTCGTGATTTCTGCTGCTGCCCGCCTTCTTCGTCCCC
CATAAGGGACTTCAGCTCCTGTCTGGCTGGGCCTCTACGGTACTTCCTCTGTGAATTGTG
TGTGAATTTGCTTTTCCTCTGTCCTCAGAGGGAAACTGTAAATCCTGTGTTTCATTACTT
GAATGTAGTTATCTATGGAAAAAAAAATATTATATATATATATATATATATACATACACA
CACACACACGCACACACACACGCACACATATATATAATAGGCTGTATATATTGCTCATTG
GAGAAAAAACGTGGGGACTGGTGATATTGTTGATCTTTTAAAATATACATATTATATATA
CTATGTGCTCTCCCCCCTGCCCCCCGCCAAAAAAAAAAAAAAAAAAAAAGGGAGCACAAG
CTGTTCGAACCAGTAGGTTCTTTTATTTGTGTGTCTAAATAAACAACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61844375|ref|XP_592512.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844375|ref|XP_592512.1|

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               768-878, gnl|bosTau2|chr26 (34588567-34588682)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               768-878, gnl|bosTau2|chr26 (34588567-34588682)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               cag (0.302389)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	cag (0.302389)
	jej (0.197844)
	col (0.195008)
	ill (0.175593)
	duo (0.172801)
	csp (0.161186)
	lnt (0.142308)
	tra (0.123092)
	cly (0.120642)
	clu (0.119646)
	cbl (0.114797)
	eje (0.0988338)