Non-Coding RNA Search

Ss1.1-rduo410b_o6.5

Sequence:


               
               GGTCCTATGCCCCGGGCGGTCCTGCCTACCAGCCAGTTGTGGAAGCCTTTGGAACAGGTA
ATAAAGGGGCGCGCTGGAGGCCCCCTGAAGTGAGCAGATGGCCTGGCCTCCTTGCCCAGG
TGTCTGTCTCTGTTGCCCAGATATTCTCCATAAAGACGGCACCATCAACAGGAAGGTCCT
AGGCAGCCGGGTGTTTGGGAACAAGGTAAACACCCACCTCTCCAAGGGCTCTGCGGCCAC
CACTAGACTCAGAGCTCGGGACCCAGCGGACCTCTCTGGTCTGGCCCAGAAGGCCAGTTT
CCACTCGTGTGTTCCCCCGCACCTCCGCCCTGGGGCGGCTCCATCTCCAAGGGAAGGTAA
AACTCGGCCCACCCCTTCCATTCCCTTCCTCAGAAGCAGCTGAAGATACTCACGGACATT
GTGTGGCCAGTTATCGCAAAGCTGGCCAGAGAGGAGGTGGATCAGGCCGTGGCTGAGGGT
GAGTGGGCAGGGCGGTGGGAGGAGCCCGGGGAACAGCTAAGCAGACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCTATGCCCCGGGCGGTCCTGCCTACCAGCCAGTTGTGGAAGCCTTTGGAACAGGTA
ATAAAGGGGCGCGCTGGAGGCCCCCTGAAGTGAGCAGATGGCCTGGCCTCCTTGCCCAGG
TGTCTGTCTCTGTTGCCCAGATATTCTCCATAAAGACGGCACCATCAACAGGAAGGTCCT
AGGCAGCCGGGTGTTTGGGAACAAGGTAAACACCCACCTCTCCAAGGGCTCTGCGGCCAC
CACTAGACTCAGAGCTCGGGACCCAGCGGACCTCTCTGGTCTGGCCCAGAAGGCCAGTTT
CCACTCGTGTGTTCCCCCGCACCTCCGCCCTGGGGCGGCTCCATCTCCAAGGGAAGGTAA
AACTCGGCCCACCCCTTCCATTCCCTTCCTCAGAAGCAGCTGAAGATACTCACGGACATT
GTGTGGCCAGTTATCGCAAAGCTGGCCAGAGAGGAGGTGGATCAGGCCGTGGCTGAGGGT
GAGTGGGCAGGGCGGTGGGAGGAGCCCGGGGAACAGCTAAGCAGACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-158, + strand, RNAz p=0.615794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, + strand, RNAz p=0.615794

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               39-152, + strand, RNAmicro p=0.958875

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               39-152, + strand, RNAmicro p=0.958875

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-490, gnl|bosTau2|chr19 (38818609-38818120)
               

               
               1-490, gnl|Hg17|chr17 (37970386-37970881)
               

               
               1-490, gnl|Mm7|chr11 (101194180-101194685)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-490, gnl|bosTau2|chr19 (38818609-38818120)
               

               
               1-490, gnl|Hg17|chr17 (37970386-37970881)
               

               
               1-490, gnl|Mm7|chr11 (101194180-101194685)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               jej (0.0989218)

	1-490, gnl\|bosTau2\|chr19 (38818609-38818120)
	1-490, gnl\|Hg17\|chr17 (37970386-37970881)
	1-490, gnl\|Mm7\|chr11 (101194180-101194685)