Non-Coding RNA Search

Ss1.1-rduo411b_c10.5

Sequence:


               
               ACAGTATTTCCCCGACTTCCTGGGGGGGCTGGCCCCTCCCCTCGGCCAGGGCAAGGGCTC
CGGGAGCTCCCCTGCCCCTCGCCTTGTACCCTGGTTCTAAGTTTACAAAGTGTTTTCCTC
ATTCCTCTTAAGTTGTCTTCCCGCCTCTGACATTCCCTCCCTCCTTCCCACCCGCAGGGC
TGAGATCAGAGGGTGGTGATGGAAAAGGGACCTGACAATGACATGACCCTCCTGTCTCGG
GTCAGGGGAGCCAGCTACGTGGCCTCCCCTTGCCCTCATGTTTACGTTTGCAGCCTGAAG
CACTTTAAGTTGTGTGGGGGTTTTTGGTGTTTCAGTTTTTCTTTTTCTTGGGGGGGGGGG
CTCTCTCTGTTGTTCCTATAAATTATTCTCCAACTACTGCTTCCAACTGAAATAAGTCTA
TTAAACGCCTGTTCAGGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTATTTCCCCGACTTCCTGGGGGGGCTGGCCCCTCCCCTCGGCCAGGGCAAGGGCTC
CGGGAGCTCCCCTGCCCCTCGCCTTGTACCCTGGTTCTAAGTTTACAAAGTGTTTTCCTC
ATTCCTCTTAAGTTGTCTTCCCGCCTCTGACATTCCCTCCCTCCTTCCCACCCGCAGGGC
TGAGATCAGAGGGTGGTGATGGAAAAGGGACCTGACAATGACATGACCCTCCTGTCTCGG
GTCAGGGGAGCCAGCTACGTGGCCTCCCCTTGCCCTCATGTTTACGTTTGCAGCCTGAAG
CACTTTAAGTTGTGTGGGGGTTTTTGGTGTTTCAGTTTTTCTTTTTCTTGGGGGGGGGGG
CTCTCTCTGTTGTTCCTATAAATTATTCTCCAACTACTGCTTCCAACTGAAATAAGTCTA
TTAAACGCCTGTTCAGGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-103, - strand, RNAz p=0.997859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-103, - strand, RNAz p=0.997859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-448, gnl|bosTau2|chr25 (32621229-32620795)
               

               
               1-448, gnl|Hg17|chr7 (99397085-99396691)
               

               
               1-448, gnl|Mm7|chr5 (137205582-137205178)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-448, gnl|bosTau2|chr25 (32621229-32620795)
               

               
               1-448, gnl|Hg17|chr7 (99397085-99396691)
               

               
               1-448, gnl|Mm7|chr5 (137205582-137205178)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               duo (0.345602)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-448, gnl\|bosTau2\|chr25 (32621229-32620795)
	1-448, gnl\|Hg17\|chr7 (99397085-99396691)
	1-448, gnl\|Mm7\|chr5 (137205582-137205178)

	duo (0.345602)
	ill (0.175593)
	lnt (0.142308)
	nmm (0.132802)
	ute (0.132784)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)