Non-Coding RNA Search

Ss1.1-rduo412b_k16.5

Sequence:


               
               ATCAACGTCACCCTGGGGGCCCACAACATCAAGAAGCCAGAGAAGACCCAGCAGGTGATC
CCAGTGAGAAAGGCCATCTGTCACCCAGACTATAACGAGAAGCGCATCTCCAATGACATC
ATGTTACTGCAGCTGGAGAGAAAGGCCAAGCTGACTAAGGCTGTGAAGACCCTCAGCCTG
CCCGGGGCCAAGGCCAGGGTGAAGCCAGGACAGGTGTGCAGTGTGGCCGGCTGGGGGCAA
GTGGAGAGGGGTATTTACACAGACACACTGCAGGAAGTAAAGCTGACCTTGCAGAAGGAT
CAAGAGTGTGACTCCTACTTGCCTAATTATTACAACGGTAACACCCAGCTGTGTGTAGGA
GACCCAAAGAAAAAGCAAGCTACCTTTAAGGGGGACTCTGGAGGGCCCCTCGTGTGTAAC
AATGTGGCCCAGGGCATTGTCTCCTATGGAAGAAAGGATGGAACACCTCCACGAGCCTGC
ACCAAAGTCTCAAGTTTCCTGCCCTGGATAAAGAAAATCATGAAAAGCCTCTAACTGCAG
GGACCAGCTGTCCTGCCTGGAGCTGATCCAGAGTCACACTCGGGGGCTTGGGGTGCCGGC
TGCTGAATAAATGTCTCTTAGCTGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAACGTCACCCTGGGGGCCCACAACATCAAGAAGCCAGAGAAGACCCAGCAGGTGATC
CCAGTGAGAAAGGCCATCTGTCACCCAGACTATAACGAGAAGCGCATCTCCAATGACATC
ATGTTACTGCAGCTGGAGAGAAAGGCCAAGCTGACTAAGGCTGTGAAGACCCTCAGCCTG
CCCGGGGCCAAGGCCAGGGTGAAGCCAGGACAGGTGTGCAGTGTGGCCGGCTGGGGGCAA
GTGGAGAGGGGTATTTACACAGACACACTGCAGGAAGTAAAGCTGACCTTGCAGAAGGAT
CAAGAGTGTGACTCCTACTTGCCTAATTATTACAACGGTAACACCCAGCTGTGTGTAGGA
GACCCAAAGAAAAAGCAAGCTACCTTTAAGGGGGACTCTGGAGGGCCCCTCGTGTGTAAC
AATGTGGCCCAGGGCATTGTCTCCTATGGAAGAAAGGATGGAACACCTCCACGAGCCTGC
ACCAAAGTCTCAAGTTTCCTGCCCTGGATAAAGAAAATCATGAAAAGCCTCTAACTGCAG
GGACCAGCTGTCCTGCCTGGAGCTGATCCAGAGTCACACTCGGGGGCTTGGGGTGCCGGC
TGCTGAATAAATGTCTCTTAGCTGAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869370|ref|XP_585453.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869370|ref|XP_585453.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-156, gnl|bosTau2|chr21 (23771755-23771910)
               

               
               1-156, gnl|Hg17|chr14 (24171501-24171349)
               

               
               1-156, gnl|Mm7|chr14 (51034724-51034583)
               


               
               389-625, gnl|bosTau2|chr21 (23713921-23714158)
               

               
               389-625, gnl|Hg17|chr14 (24170262-24170008)
               

               
               389-625, gnl|Mm7|chr14 (51126917-51126677)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr21 (23771755-23771910)
               

               
               1-156, gnl|Hg17|chr14 (24171501-24171349)
               

               
               1-156, gnl|Mm7|chr14 (51034724-51034583)
               


               
               389-625, gnl|bosTau2|chr21 (23713921-23714158)
               

               
               389-625, gnl|Hg17|chr14 (24170262-24170008)
               

               
               389-625, gnl|Mm7|chr14 (51126917-51126677)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               duo (0.345602)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cst (0.140036)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cst (0.140036)
               

               
               eru (0.120048)

	1-156, gnl\|bosTau2\|chr21 (23771755-23771910)
	1-156, gnl\|Hg17\|chr14 (24171501-24171349)
	1-156, gnl\|Mm7\|chr14 (51034724-51034583)

	389-625, gnl\|bosTau2\|chr21 (23713921-23714158)
	389-625, gnl\|Hg17\|chr14 (24170262-24170008)
	389-625, gnl\|Mm7\|chr14 (51126917-51126677)

	duo (0.345602)
	ill (0.175593)
	sin (0.174948)
	cst (0.140036)
	eru (0.120048)