Ss1.1-rduo412b_m4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTGTAAATAAGACCACAGCGACCAAGCTCAACTCGGGTGAAGACAAAATCGAGGACAT TCTGGTTCTGCACTTGGATAGGGGAAAGGACTACTTTTTGTCTGTGTCTGGGAACTACAT GCCCAGCTGTTTTGGATCACCCATTCACACCCTGTGCTACATGAAGGAGCCCATCTTGGA CCTGCCCCTAGAAACTATTAGACACCTGACTTTAATGCAACTACAGACTGAAGATGATGG GAGCCATTTGGAGAAACCCATGGATATCCCCAAAGAGCTCTGGATGATGGTTGATTACCT GTACCGAAACGCCATCCAGCAGGAAGATCTGTTTCAGCAGCCAGGCCTGCGCTTGGAATT TGAACATATCAGGGACTGTTTGGATACTGGGACAATCGATCACCTCTCTGCTAGCAATCA TTCCGTAGCCGAAGCCCTGCTGCTTTTCCTGGAGAGCCTGCCAGAGCCCGTCATCTGTTA CAGGGCCTACCGAAGCTGCTTGGAGTGTTCTGGCAACCTCACAGCAAGTAACCAGGTCAT CACTACTCTCCCCGCATGCCACAGAAATGTCTTCACCTACCTGATGGCGTTTTTGCAAGA ACTGCTGAAAAATTCAGCAAGAAATCATTTGGATGGTAATATTCTAGCTAGCATATTTGG TAGCTTGCTGCTTCGAAGCCCAGCTGGTCACCAAAAGCTTGAAACGGCAGAGAAGAAGAA GGCTCAAGAATTTATTCACCAGTTCCTCTGCAACTCACCCTGAGCCTCTTCATCTCCTCT CCTATTCTGCCTGGGGCAGCCAGTTACCAGCACCCCCTGTTTGAGCTCAAGAGCTGCCTT GAGAGGATGTGAACCCCCTTAGACGCAAAAGTGGCAGCTGCCTGTTTCTCGAGCCCAGAC CGCCCTCCCCACCATGGCTGTCACTCTTGGTGCTGCTGCAAGTTGTGAAGACACGGGGGG AAATCCACCACAATAAAACTGACATACATTGTTCAACTTTAGTAATGTAACAGATAGATC TCTATTTTTTTTTTTTTAATGTTTAAACAACTGTACTTCATGTGCTCACTCTGCCTGCCT CCAGGGCATACAGTGCCTTCCCTGTAGCTTGGGCCCAGCTCCTCACAATCAGATAGCTGA ACAAACTTTGGAGTCTGGAAGGATAAATGAGTTGGACACAGGAATGCAAACGGAAGCTGC TGAATAAACAGGTCACAGCCACACCAGATGCCTCCAGCACTCTGTCTGAGGACATGTGTG TATGCATATGCAAACCCTACCCCACTTCCAACTCAAATGTGGCTCACCTCTGGAGCTGGC CACTAAGCCTTTGAGGCCAATACAGTGGCGTGAAAATGAAAATACTGAAGAAATTGTTGT TCTGGTGAAACAAGTGGAATTTTCTGGCCAACGAATCCTCCAAACTGTATATAATGCATT CCCTCTCTCACATGTGTAATATATTTTAATGATAAATATATTTTTAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTGTAAATAAGACCACAGCGACCAAGCTCAACTCGGGTGAAGACAAAATCGAGGACAT TCTGGTTCTGCACTTGGATAGGGGAAAGGACTACTTTTTGTCTGTGTCTGGGAACTACAT GCCCAGCTGTTTTGGATCACCCATTCACACCCTGTGCTACATGAAGGAGCCCATCTTGGA CCTGCCCCTAGAAACTATTAGACACCTGACTTTAATGCAACTACAGACTGAAGATGATGG GAGCCATTTGGAGAAACCCATGGATATCCCCAAAGAGCTCTGGATGATGGTTGATTACCT GTACCGAAACGCCATCCAGCAGGAAGATCTGTTTCAGCAGCCAGGCCTGCGCTTGGAATT TGAACATATCAGGGACTGTTTGGATACTGGGACAATCGATCACCTCTCTGCTAGCAATCA TTCCGTAGCCGAAGCCCTGCTGCTTTTCCTGGAGAGCCTGCCAGAGCCCGTCATCTGTTA CAGGGCCTACCGAAGCTGCTTGGAGTGTTCTGGCAACCTCACAGCAAGTAACCAGGTCAT CACTACTCTCCCCGCATGCCACAGAAATGTCTTCACCTACCTGATGGCGTTTTTGCAAGA ACTGCTGAAAAATTCAGCAAGAAATCATTTGGATGGTAATATTCTAGCTAGCATATTTGG TAGCTTGCTGCTTCGAAGCCCAGCTGGTCACCAAAAGCTTGAAACGGCAGAGAAGAAGAA GGCTCAAGAATTTATTCACCAGTTCCTCTGCAACTCACCCTGAGCCTCTTCATCTCCTCT CCTATTCTGCCTGGGGCAGCCAGTTACCAGCACCCCCTGTTTGAGCTCAAGAGCTGCCTT GAGAGGATGTGAACCCCCTTAGACGCAAAAGTGGCAGCTGCCTGTTTCTCGAGCCCAGAC CGCCCTCCCCACCATGGCTGTCACTCTTGGTGCTGCTGCAAGTTGTGAAGACACGGGGGG AAATCCACCACAATAAAACTGACATACATTGTTCAACTTTAGTAATGTAACAGATAGATC TCTATTTTTTTTTTTTTAATGTTTAAACAACTGTACTTCATGTGCTCACTCTGCCTGCCT CCAGGGCATACAGTGCCTTCCCTGTAGCTTGGGCCCAGCTCCTCACAATCAGATAGCTGA ACAAACTTTGGAGTCTGGAAGGATAAATGAGTTGGACACAGGAATGCAAACGGAAGCTGC TGAATAAACAGGTCACAGCCACACCAGATGCCTCCAGCACTCTGTCTGAGGACATGTGTG TATGCATATGCAAACCCTACCCCACTTCCAACTCAAATGTGGCTCACCTCTGGAGCTGGC CACTAAGCCTTTGAGGCCAATACAGTGGCGTGAAAATGAAAATACTGAAGAAATTGTTGT TCTGGTGAAACAAGTGGAATTTTCTGGCCAACGAATCCTCCAAACTGTATATAATGCATT CCCTCTCTCACATGTGTAATATATTTTAATGATAAATATATTTTTAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 683-802, - strand, RNAz p=0.783399 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 683-802, - strand, RNAz p=0.783399 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-208, gnl|bosTau2|chr3 (75236978-75237185) | |
| 1-208, gnl|canFam2|chr15 (7677199-7676922) | |
| 1-208, gnl|danRer3|chr14 (56176523-56176251) | |
| 1-208, gnl|dasNov1|scaffold_6211 (30840-31116) | |
| 1-208, gnl|echTel1|scaffold_261096 (1208-932) | |
| 1-208, gnl|fr1|chrUn (286291823-286291589) | |
| 1-208, gnl|galGal2|chr23 (3100889-3100623) | |
| 1-208, gnl|hg17|chr1 (38007680-38007956) | |
| 1-208, gnl|Hg17|chr1 (38007902-38007695) | |
| 1-208, gnl|loxAfr1|scaffold_6249 (39195-39473) | |
| 1-208, gnl|mm7|chr4 (124238076-124237797) | |
| 1-208, gnl|Mm7|chr4 (124237849-124238056) | |
| 1-208, gnl|monDom2|scaffold_43 (11630782-11630519) | |
| 1-208, gnl|oryCun1|scaffold_214111 (1211-935) | |
| 1-208, gnl|panTro1|chr1 (38856932-38857208) | |
| 1-208, gnl|rheMac2|chr1 (40744987-40745263) | |
| 1-208, gnl|rn3|chr5 (144136276-144136000) | |
| 1-208, gnl|tetNig1|chr1 (4191205-4191440) | |
| 1-208, gnl|xenTro1|scaffold_864 (439356-439616) | |
| 408-537, gnl|bosTau2|chr3 (75241990-75242119) | |
| 408-537, gnl|Hg17|chr1 (38000653-38000524) | |
| 408-537, gnl|Mm7|chr4 (124242899-124243028) | |
| 646-1488, gnl|bosTau2|chr3 (75243534-75244357) | |
| 646-1488, gnl|Hg17|chr1 (37997197-37995466) | |
| 646-1488, gnl|Mm7|chr4 (124245349-124246153) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-208, gnl|bosTau2|chr3 (75236978-75237185) | |
| 1-208, gnl|canFam2|chr15 (7677199-7676922) | |
| 1-208, gnl|danRer3|chr14 (56176523-56176251) | |
| 1-208, gnl|dasNov1|scaffold_6211 (30840-31116) | |
| 1-208, gnl|echTel1|scaffold_261096 (1208-932) | |
| 1-208, gnl|fr1|chrUn (286291823-286291589) | |
| 1-208, gnl|galGal2|chr23 (3100889-3100623) | |
| 1-208, gnl|hg17|chr1 (38007680-38007956) | |
| 1-208, gnl|Hg17|chr1 (38007902-38007695) | |
| 1-208, gnl|loxAfr1|scaffold_6249 (39195-39473) | |
| 1-208, gnl|mm7|chr4 (124238076-124237797) | |
| 1-208, gnl|Mm7|chr4 (124237849-124238056) | |
| 1-208, gnl|monDom2|scaffold_43 (11630782-11630519) | |
| 1-208, gnl|oryCun1|scaffold_214111 (1211-935) | |
| 1-208, gnl|panTro1|chr1 (38856932-38857208) | |
| 1-208, gnl|rheMac2|chr1 (40744987-40745263) | |
| 1-208, gnl|rn3|chr5 (144136276-144136000) | |
| 1-208, gnl|tetNig1|chr1 (4191205-4191440) | |
| 1-208, gnl|xenTro1|scaffold_864 (439356-439616) | |
| 408-537, gnl|bosTau2|chr3 (75241990-75242119) | |
| 408-537, gnl|Hg17|chr1 (38000653-38000524) | |
| 408-537, gnl|Mm7|chr4 (124242899-124243028) | |
| 646-1488, gnl|bosTau2|chr3 (75243534-75244357) | |
| 646-1488, gnl|Hg17|chr1 (37997197-37995466) | |
| 646-1488, gnl|Mm7|chr4 (124245349-124246153) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nje (0.16592) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cly (0.120642) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nje (0.16592) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cly (0.120642) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |