Non-Coding RNA Search

Ss1.1-rduo413b_e9.5

Sequence:


               
               CAGCCCCTCAGCCAGGACCCCGGAGGGCCTGCTGCCAGGGGTGGCCTCACGGCCAGAGAC
CCTCGCCGCACTGCTGCCAGCCCCCGGTTGGGCGGAAAGTGCCCTTGGCACGGGCACCGG
GGCGTGGGGTAGAGAAGGAGGGCTCGCACCTCTGGTCACAGGACCAGGAAAGCCAGGTGG
CGTGAAAACTACACACTATTTATTTTGGGGTTTTGTCAAAGGCAGGCGGGATTTTGGAGA
TGGGGCTACAAGAGCCTGCTCTGCGGCGGCTGCCCTGCCTACCAGGGGCCCAGGTCAGCC
TCCCAGCCCTTTGCCAGGGCCCGAGAGGGGGCCCGGGGGCCCAGGAGGAGGGAGCACCCC
CACGCCCTCCCTGCTGCCAATGCCATTCCAGAACCTTGGTCAGTGTTTCCTGTGGGGGGG
CTGGGCCCAGAGAGAGCACGTGTCTGGCGCTGCTATCCTTGTGTCCTACCCGCATCGACC
CTGCACCAAAAGGGCTTTCTCTGGTCCCCTGTCCCCAAGACAGTGGTCCCTTCCTGACAA
AAGAGCCTGCACATGTGGGTGAGCAAACCCAAGCTGTTTACAGCTCTTTCTGTCCTGCTG
TCTGGTCGCGCCTCGTCTTCATCACCCGAACAAAATGCAGAGGAACCAGGAGCCGCCGAG
AGGGGTGGGGGCCTGCTGTCCCCGCCCTGCCCTTCCCTCTGTGAGCTCGGAGCGCCCCTT
GTCCTTCCCGTCGCCCGTCCGAGAGGCTGGGAACCTGCTCGGGTCGCCCTGAGCCTGCGT
CCGGGCTGTGGGCTCACAGAGCCCCACTGCCCAGCTCAGAGGATGCTCCTCCCAGGCGCC
AAGTTGCTTGCAAATGGAGTTGCGGAGAGTAGACGCTTCCAGACTCAGAAGCTTCTAGAA
CTGAACCAGGCTGCTGGGGACCTGTGTTTGACCCCCCACTCCCACCCCCGGTCCCCCGCT
GCCTTTTCTTTGTGGAGGTTCCTAATCTGCTGCTGAAGCACAATATTTTGGTGCTTTCTT
TTCTCATTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCCCTCAGCCAGGACCCCGGAGGGCCTGCTGCCAGGGGTGGCCTCACGGCCAGAGAC
CCTCGCCGCACTGCTGCCAGCCCCCGGTTGGGCGGAAAGTGCCCTTGGCACGGGCACCGG
GGCGTGGGGTAGAGAAGGAGGGCTCGCACCTCTGGTCACAGGACCAGGAAAGCCAGGTGG
CGTGAAAACTACACACTATTTATTTTGGGGTTTTGTCAAAGGCAGGCGGGATTTTGGAGA
TGGGGCTACAAGAGCCTGCTCTGCGGCGGCTGCCCTGCCTACCAGGGGCCCAGGTCAGCC
TCCCAGCCCTTTGCCAGGGCCCGAGAGGGGGCCCGGGGGCCCAGGAGGAGGGAGCACCCC
CACGCCCTCCCTGCTGCCAATGCCATTCCAGAACCTTGGTCAGTGTTTCCTGTGGGGGGG
CTGGGCCCAGAGAGAGCACGTGTCTGGCGCTGCTATCCTTGTGTCCTACCCGCATCGACC
CTGCACCAAAAGGGCTTTCTCTGGTCCCCTGTCCCCAAGACAGTGGTCCCTTCCTGACAA
AAGAGCCTGCACATGTGGGTGAGCAAACCCAAGCTGTTTACAGCTCTTTCTGTCCTGCTG
TCTGGTCGCGCCTCGTCTTCATCACCCGAACAAAATGCAGAGGAACCAGGAGCCGCCGAG
AGGGGTGGGGGCCTGCTGTCCCCGCCCTGCCCTTCCCTCTGTGAGCTCGGAGCGCCCCTT
GTCCTTCCCGTCGCCCGTCCGAGAGGCTGGGAACCTGCTCGGGTCGCCCTGAGCCTGCGT
CCGGGCTGTGGGCTCACAGAGCCCCACTGCCCAGCTCAGAGGATGCTCCTCCCAGGCGCC
AAGTTGCTTGCAAATGGAGTTGCGGAGAGTAGACGCTTCCAGACTCAGAAGCTTCTAGAA
CTGAACCAGGCTGCTGGGGACCTGTGTTTGACCCCCCACTCCCACCCCCGGTCCCCCGCT
GCCTTTTCTTTGTGGAGGTTCCTAATCTGCTGCTGAAGCACAATATTTTGGTGCTTTCTT
TTCTCATTTGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               474-591, - strand, RNAz p=0.533574
               

               
               735-879, - strand, RNAz p=0.865662

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-591, - strand, RNAz p=0.533574
               

               
               735-879, - strand, RNAz p=0.865662

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               292-1032, gnl|bosTau2|chr11 (78875876-78876628)
               

               
               292-1032, gnl|Hg17|chr9 (128931030-128932069)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-1032, gnl|bosTau2|chr11 (78875876-78876628)
               

               
               292-1032, gnl|Hg17|chr9 (128931030-128932069)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

	474-591, - strand, RNAz p=0.533574
	735-879, - strand, RNAz p=0.865662

	292-1032, gnl\|bosTau2\|chr11 (78875876-78876628)
	292-1032, gnl\|Hg17\|chr9 (128931030-128932069)