Non-Coding RNA Search

Ss1.1-rduo415b_f22.5

Sequence:


               
               AAACAAAATTAAAAATCATTACCATTCTCACTTAAAATCAAACATACAAAAAGATACGAT
TTATATAAATATCTAAAACAGTGACTGGCATACGGTCAGTGCTCAAGGGAAAGTGAGCTG
CCTCTATGATTAACTTTATTCTTGGGAGTATCGGTGTTGCTCTGAGGGGAGGCCGAGTGC
GTCGGGGCCCGGATGGACCCAGTGTGCTGGCTCAGACGACATCCCCACTTTCTCACAGAG
GACATCTCAGTGGTGTTCAGCAGAGCCTCCTGGGAAGGCCGGGCGGACTTCTCCCAGGCC
GACGTGCACCGCCAGATCGCCATCGTGTTCAAGACACCGCCCTACGAGGACCTGGAGATC
GTTGAACCGGTGACAGTGAACGTGTTCCTGCAGCGGCTCACGGACGGGGTCTGCAGTGAG
CCTCTGCCCTTCACGTACCTGCCTCGGGACCACGACAGCTACGGAGTGGACAAGAAGCGG
AAACGGGGGATGCCTGACGTGCTTGGGGAGCTCAATAGCTCTGACCCCCATGGCATCGAG
AGCAAACGACGGAGGAAAAAGCCGGCCTTCCTGGATCACTTCCTGCCCAGCCATGGCTCA
GGCCCGTTCCTCCCACCGTCAGCGCTGCTGCCAGACACAGACTTCTTCCCAGGCACTGTA
TCCCTCCCTGGCCTGGAGCCCCCCGGCGGGCCGGATCTCCTGGACGATGGTTTTGCCTAT
GACCCTGCTGCCCCCACACTCTTCACCATGCTGGACATGCTGCCCCCAGCGCCACCACTC
TCCAGCGCTGTCGCGGGCAACGGGGGGGCAGGGGCCCCGGTCGCGGAGCCCCCGGGCCCT
GAGCCGCTGACGCTGGACTCGTACCAGGCCCCGGGCTCCGGGGATGGAGGCACTGCCAGC
CTCGTGGGCAGCAACATGTTCCCCAACCAGTACCGCGAGGGGGGCTTTGGAAGCGGCCTC
CTGTCCCCCGGGCCTGAGGCCACGTAGCCCCTGCGGCACTGGAGGAGAGGCACTGGGTGG
GGAGGGTGGTGGAAGGGGCCGTGCAAACCCAACCGGGATGTCCAGCACCCCCATCCCCTT
GGGCTGCCCTTGGTCCGTCTTCCGACGTCCTCATCCTTCCTAATCGGACATCTTCAGTGC
TGGAGAGAAACGCCGTAGCATCGGTTTCCCTTGAGCCCATTTTACAAATGAGAAAACTGA
GTCTGGAGAGGAAAAGGGGTTTGGCTTCCAAATACTAGCTCTTTAAAGTTGCCTCAGCTG
GGGTGCCTTCTCCCGGCGGATTCTAAAGTGTAAATAGGGGAGGGGGGCGCAGATCCCTAG
CCCTCCCTCCCCACGCCTGAAGGTGGGGGGGGTAATTGTTCACAGTCTTCCCAATAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAAAATTAAAAATCATTACCATTCTCACTTAAAATCAAACATACAAAAAGATACGAT
TTATATAAATATCTAAAACAGTGACTGGCATACGGTCAGTGCTCAAGGGAAAGTGAGCTG
CCTCTATGATTAACTTTATTCTTGGGAGTATCGGTGTTGCTCTGAGGGGAGGCCGAGTGC
GTCGGGGCCCGGATGGACCCAGTGTGCTGGCTCAGACGACATCCCCACTTTCTCACAGAG
GACATCTCAGTGGTGTTCAGCAGAGCCTCCTGGGAAGGCCGGGCGGACTTCTCCCAGGCC
GACGTGCACCGCCAGATCGCCATCGTGTTCAAGACACCGCCCTACGAGGACCTGGAGATC
GTTGAACCGGTGACAGTGAACGTGTTCCTGCAGCGGCTCACGGACGGGGTCTGCAGTGAG
CCTCTGCCCTTCACGTACCTGCCTCGGGACCACGACAGCTACGGAGTGGACAAGAAGCGG
AAACGGGGGATGCCTGACGTGCTTGGGGAGCTCAATAGCTCTGACCCCCATGGCATCGAG
AGCAAACGACGGAGGAAAAAGCCGGCCTTCCTGGATCACTTCCTGCCCAGCCATGGCTCA
GGCCCGTTCCTCCCACCGTCAGCGCTGCTGCCAGACACAGACTTCTTCCCAGGCACTGTA
TCCCTCCCTGGCCTGGAGCCCCCCGGCGGGCCGGATCTCCTGGACGATGGTTTTGCCTAT
GACCCTGCTGCCCCCACACTCTTCACCATGCTGGACATGCTGCCCCCAGCGCCACCACTC
TCCAGCGCTGTCGCGGGCAACGGGGGGGCAGGGGCCCCGGTCGCGGAGCCCCCGGGCCCT
GAGCCGCTGACGCTGGACTCGTACCAGGCCCCGGGCTCCGGGGATGGAGGCACTGCCAGC
CTCGTGGGCAGCAACATGTTCCCCAACCAGTACCGCGAGGGGGGCTTTGGAAGCGGCCTC
CTGTCCCCCGGGCCTGAGGCCACGTAGCCCCTGCGGCACTGGAGGAGAGGCACTGGGTGG
GGAGGGTGGTGGAAGGGGCCGTGCAAACCCAACCGGGATGTCCAGCACCCCCATCCCCTT
GGGCTGCCCTTGGTCCGTCTTCCGACGTCCTCATCCTTCCTAATCGGACATCTTCAGTGC
TGGAGAGAAACGCCGTAGCATCGGTTTCCCTTGAGCCCATTTTACAAATGAGAAAACTGA
GTCTGGAGAGGAAAAGGGGTTTGGCTTCCAAATACTAGCTCTTTAAAGTTGCCTCAGCTG
GGGTGCCTTCTCCCGGCGGATTCTAAAGTGTAAATAGGGGAGGGGGGCGCAGATCCCTAG
CCCTCCCTCCCCACGCCTGAAGGTGGGGGGGGTAATTGTTCACAGTCTTCCCAATAAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|914216|gb|AAB33259.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|914216|gb|AAB33259.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               714-833, - strand, RNAz p=0.630871
               

               
               874-1033, - strand, RNAz p=0.994839
               

               
               1192-1380, - strand, RNAz p=0.99999

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               714-833, - strand, RNAz p=0.630871
               

               
               874-1033, - strand, RNAz p=0.994839
               

               
               1192-1380, - strand, RNAz p=0.99999

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               125-452, gnl|bosTau2|chr18 (38798754-38798426)
               

               
               125-452, gnl|Hg17|chr19 (50227536-50227845)
               

               
               125-452, gnl|Mm7|chr7 (17295210-17294881)
               


               
               557-1380, gnl|bosTau2|chr18 (38793405-38792579)
               

               
               557-1380, gnl|Hg17|chr19 (50232466-50233276)
               

               
               557-1380, gnl|Mm7|chr7 (17289344-17288608)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-452, gnl|bosTau2|chr18 (38798754-38798426)
               

               
               125-452, gnl|Hg17|chr19 (50227536-50227845)
               

               
               125-452, gnl|Mm7|chr7 (17295210-17294881)
               


               
               557-1380, gnl|bosTau2|chr18 (38793405-38792579)
               

               
               557-1380, gnl|Hg17|chr19 (50232466-50233276)
               

               
               557-1380, gnl|Mm7|chr7 (17289344-17288608)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               eru (0.120048)

	714-833, - strand, RNAz p=0.630871
	874-1033, - strand, RNAz p=0.994839
	1192-1380, - strand, RNAz p=0.99999

	125-452, gnl\|bosTau2\|chr18 (38798754-38798426)
	125-452, gnl\|Hg17\|chr19 (50227536-50227845)
	125-452, gnl\|Mm7\|chr7 (17295210-17294881)

	557-1380, gnl\|bosTau2\|chr18 (38793405-38792579)
	557-1380, gnl\|Hg17\|chr19 (50232466-50233276)
	557-1380, gnl\|Mm7\|chr7 (17289344-17288608)