Ss1.1-rduo415b_i20.5
|
AGTATCCAAAGGCCTTTCTAGATGGAGACAGAATAACTAACTTGTACACACAGTGTGTGC
CTATAAGTGTCCAGGCTCAGAGCTGGTGGAAACCCTTCCGTTGGGCATACATAGGGTTAA
ACTCCCTACACTGACCATTATCACTTACTTGCTGGTGTCCTGGGCAGCACCGTAATGCCT
TTACCAGGAATGTCCGCGGTTGCATCAGCCAGTGAAGCCGAGGTGGCTTTGTGACCAGAG
CATCCTTGGGCTTGCCTGTGCTGAGGTCTGCGTGAGAGGCTGGGCCTGCACAGCTTGTGG
GGAGCTCAGTGGGAGCACCAGCTCCTCATCTATCTCCTCCTGGTACTTGCAGTCCTTCAC
CCTAGGCTTGTATGTCATATGCCTGGAGCAGAGCCCAAGGGACCGCAGAGGAGCCCCTGG
GTGCAGTCACCCACCCAGGACATGGAGACCGCCTGGTGGGAGAAGATAGGAAATCCTCTC
TCTGCCTTGGCAGCAAGTGGGGCTCTGGGCTGCCAGTACCGACACTACCTGTGTTTGTCC
CGTCCAGGCCAAAGGTCAAGCCAGGTTGGTTTGTGGATCCCTGAGTCATCAAAGGGACCT
GGGGTGAGCAGGGTGGGCCCTAGCACAGCATCCCCTGTGGCAAGTCAGGTCATGTCTTTT
CAGCTAGAAGAGGCCAGGAGGAGGAATCGGAGGGCCTGCATTGTAATACTCATCAGGTTT
TGTTTTTTCTCTGAAGTTGTTGATTGGAGATGTGGGTTATTCCCCAAGATGTCTCATCAT
GAGGAAAAAGGAACTTCCTTTTGTTCACATTTGGGACTTTAGTGCCATATCATATAGCAA
AAGGCAGTATCAGCCAGATCAGTGTTAAATTGAAAAAAGTACAGTATCGCCATAGGAGGA
ATCTGTTTTAGGTTTTGGAATATGTTTGAAGAGTGGGTTGGGAGAAAGGCGTTTCCTCAT
TGCCCTAAATCAGTATGAATACTGTATTCTTCTGTCAAAACCAGAAATTTGCACAGGTAG
AAATTCCCTCCCTCGTCGGGGGGAGAAGCTGCCCCCAGAATCTGTGAGGACGGTATTCCA
GGGGTCCTGGCTTGCAAAGATTTAGTTATTAGGTAAAGCCAGGGCCAAGGCAGAGAACAA
GGGCTCCTGTGTCTACCATCGCCCTGGAACAGCACATGGTCACCCCAGACTCATCCCGCC
GTCTGAGGGAGATGGCAGAGAGAAATGGCCCCAGGCTCCGCCTCCTTTCAGTCATTCCTT
AACGCCCTTCCACGGGAGACCAGAACACTTCCCATATCGTGCTGCAGACACTCTAGCCTG
ATGTCTGAGAGTCGCATCAGGGTGCGCGGTGCAAATGCAATTCAGTTAGGAATTGATGCA
GTGACACTGAAATCCTGCAGACCAAAACCCACTCGTCAGCAGGAGCGGTGGCCCGGGGCC
CAGCACCAGTGGTCCTCTGGCTTATCTGAGGGCCACCGTGTCGGGCGAGGAGATCCAGGC
CAAGGGTCCAGGCTGCTTTAGTCCATCTGTGCCCCGCTCGGTTGGGGACAGGTGGTTTTT
CTTTATTGTAAAATTGTGGACTTTTAAAACCTGTTGACTAAACAGTAATTAATTTATATT
TGTGAAAAATGCCACTGTCCTAGTGATTTCTGATGTAAATAATGTTGTTTATATAGTATG
TATTAAATTTTCCTACATTGTAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTATCCAAAGGCCTTTCTAGATGGAGACAGAATAACTAACTTGTACACACAGTGTGTGC
CTATAAGTGTCCAGGCTCAGAGCTGGTGGAAACCCTTCCGTTGGGCATACATAGGGTTAA
ACTCCCTACACTGACCATTATCACTTACTTGCTGGTGTCCTGGGCAGCACCGTAATGCCT
TTACCAGGAATGTCCGCGGTTGCATCAGCCAGTGAAGCCGAGGTGGCTTTGTGACCAGAG
CATCCTTGGGCTTGCCTGTGCTGAGGTCTGCGTGAGAGGCTGGGCCTGCACAGCTTGTGG
GGAGCTCAGTGGGAGCACCAGCTCCTCATCTATCTCCTCCTGGTACTTGCAGTCCTTCAC
CCTAGGCTTGTATGTCATATGCCTGGAGCAGAGCCCAAGGGACCGCAGAGGAGCCCCTGG
GTGCAGTCACCCACCCAGGACATGGAGACCGCCTGGTGGGAGAAGATAGGAAATCCTCTC
TCTGCCTTGGCAGCAAGTGGGGCTCTGGGCTGCCAGTACCGACACTACCTGTGTTTGTCC
CGTCCAGGCCAAAGGTCAAGCCAGGTTGGTTTGTGGATCCCTGAGTCATCAAAGGGACCT
GGGGTGAGCAGGGTGGGCCCTAGCACAGCATCCCCTGTGGCAAGTCAGGTCATGTCTTTT
CAGCTAGAAGAGGCCAGGAGGAGGAATCGGAGGGCCTGCATTGTAATACTCATCAGGTTT
TGTTTTTTCTCTGAAGTTGTTGATTGGAGATGTGGGTTATTCCCCAAGATGTCTCATCAT
GAGGAAAAAGGAACTTCCTTTTGTTCACATTTGGGACTTTAGTGCCATATCATATAGCAA
AAGGCAGTATCAGCCAGATCAGTGTTAAATTGAAAAAAGTACAGTATCGCCATAGGAGGA
ATCTGTTTTAGGTTTTGGAATATGTTTGAAGAGTGGGTTGGGAGAAAGGCGTTTCCTCAT
TGCCCTAAATCAGTATGAATACTGTATTCTTCTGTCAAAACCAGAAATTTGCACAGGTAG
AAATTCCCTCCCTCGTCGGGGGGAGAAGCTGCCCCCAGAATCTGTGAGGACGGTATTCCA
GGGGTCCTGGCTTGCAAAGATTTAGTTATTAGGTAAAGCCAGGGCCAAGGCAGAGAACAA
GGGCTCCTGTGTCTACCATCGCCCTGGAACAGCACATGGTCACCCCAGACTCATCCCGCC
GTCTGAGGGAGATGGCAGAGAGAAATGGCCCCAGGCTCCGCCTCCTTTCAGTCATTCCTT
AACGCCCTTCCACGGGAGACCAGAACACTTCCCATATCGTGCTGCAGACACTCTAGCCTG
ATGTCTGAGAGTCGCATCAGGGTGCGCGGTGCAAATGCAATTCAGTTAGGAATTGATGCA
GTGACACTGAAATCCTGCAGACCAAAACCCACTCGTCAGCAGGAGCGGTGGCCCGGGGCC
CAGCACCAGTGGTCCTCTGGCTTATCTGAGGGCCACCGTGTCGGGCGAGGAGATCCAGGC
CAAGGGTCCAGGCTGCTTTAGTCCATCTGTGCCCCGCTCGGTTGGGGACAGGTGGTTTTT
CTTTATTGTAAAATTGTGGACTTTTAAAACCTGTTGACTAAACAGTAATTAATTTATATT
TGTGAAAAATGCCACTGTCCTAGTGATTTCTGATGTAAATAATGTTGTTTATATAGTATG
TATTAAATTTTCCTACATTGTAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-135, gnl|bosTau2|chr21 (8131626-8131757) |
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1-135, gnl|canFam2|chr3 (49965518-49965201) |
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1-135, gnl|echTel1|scaffold_184754 (2516-2882) |
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1-135, gnl|hg17|chr15 (91370267-91370577) |
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1-135, gnl|Hg17|chr15 (91370398-91370529) |
|
1-135, gnl|loxAfr1|scaffold_48588 (7379-7000) |
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1-135, gnl|mm7|chr7 (69281185-69280877) |
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1-135, gnl|Mm7|chr7 (69281039-69280901) |
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1-135, gnl|monDom2|scaffold_12 (69216991-69216594) |
|
1-135, gnl|panTro1|chr16 (92343007-92343316) |
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1-135, gnl|rheMac2|chr7 (72884200-72884511) |
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1-135, gnl|rn3|chr1 (128686896-128686584) |
| |
|
143-1135, gnl|bosTau2|chr21 (8131793-8132776) |
|
143-1135, gnl|Hg17|chr15 (91370544-91371566) |
|
143-1135, gnl|Mm7|chr7 (69280868-69280024) |
| |
|
1228-1434, gnl|bosTau2|chr21 (8132883-8133098) |
|
1228-1434, gnl|Hg17|chr15 (91371700-91371926) |
|
1228-1434, gnl|Mm7|chr7 (69279914-69279707) |
| |
|
1441-1704, gnl|bosTau2|chr21 (8133084-8133346) |
|
1441-1704, gnl|Hg17|chr15 (91371892-91372175) |
|
1441-1704, gnl|Mm7|chr7 (69279721-69279450) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-135, gnl|bosTau2|chr21 (8131626-8131757) |
|
1-135, gnl|canFam2|chr3 (49965518-49965201) |
|
1-135, gnl|echTel1|scaffold_184754 (2516-2882) |
|
1-135, gnl|hg17|chr15 (91370267-91370577) |
|
1-135, gnl|Hg17|chr15 (91370398-91370529) |
|
1-135, gnl|loxAfr1|scaffold_48588 (7379-7000) |
|
1-135, gnl|mm7|chr7 (69281185-69280877) |
|
1-135, gnl|Mm7|chr7 (69281039-69280901) |
|
1-135, gnl|monDom2|scaffold_12 (69216991-69216594) |
|
1-135, gnl|panTro1|chr16 (92343007-92343316) |
|
1-135, gnl|rheMac2|chr7 (72884200-72884511) |
|
1-135, gnl|rn3|chr1 (128686896-128686584) |
| |
|
143-1135, gnl|bosTau2|chr21 (8131793-8132776) |
|
143-1135, gnl|Hg17|chr15 (91370544-91371566) |
|
143-1135, gnl|Mm7|chr7 (69280868-69280024) |
| |
|
1228-1434, gnl|bosTau2|chr21 (8132883-8133098) |
|
1228-1434, gnl|Hg17|chr15 (91371700-91371926) |
|
1228-1434, gnl|Mm7|chr7 (69279914-69279707) |
| |
|
1441-1704, gnl|bosTau2|chr21 (8133084-8133346) |
|
1441-1704, gnl|Hg17|chr15 (91371892-91372175) |
|
1441-1704, gnl|Mm7|chr7 (69279721-69279450) |
|
pro (0.512033) |
|
amn (0.417711) |
|
ill (0.351185) |
|
duo (0.345602) |
|
cty (0.31224) |
|
pla (0.267344) |
|
tes (0.207814) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
nco (0.161734) |
|
ski (0.146735) |
|
pty (0.142714) |
|
eep (0.122564) |
|
eru (0.120048) |
|
med (0.116252) |
|
pro (0.512033) |
|
amn (0.417711) |
|
ill (0.351185) |
|
duo (0.345602) |
|
cty (0.31224) |
|
pla (0.267344) |
|
tes (0.207814) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
nco (0.161734) |
|
ski (0.146735) |
|
pty (0.142714) |
|
eep (0.122564) |
|
eru (0.120048) |
|
med (0.116252) |
