Non-Coding RNA Search

Ss1.1-rduo416b_d13.5.5

Sequence:


               
               TTTTTCCCAATACTGGTGTGTGACTGGGTGAGGAACCCTTTCTCAAAATTTCAGCCTGAG
GTTTTTGTTTTTGAGAAGAGGAAGAACTCTTGAGAGTCCTAGTCTGACAGTCGTGGATTT
CTCTGAAACCAGAGTTGCTTATTGTTGACACTCACATATGTTGATGGTTCCCTTAACTTC
AATGTTTTTTTTAAGGGTTCCTCCAGGGTAAAATTACTAAACAAGGTGGAAGAGACAGAC
ACTGTGGAAACTAATGGAAAAAAGCTGGAAGAGGGCTTCAAAATAAACTGTCTGGATTGA
GAATACTATGGGGTTGTGAAATTAGCTTGTGGAGTTGGATATATTCTTAAGTTTTAAAAA
TTTTAGTAGTGGTGGTTCTTCCTGCACCAATGGCTATATTTGTTTATTGGCAAGTGAACA
TAGAAATATATTTTTATCCTCCTAGCTAGCGTTCCTGCTAAGTCAGACTAGAAGGATTTG
GGAAGGGCAAAGATAATTGAAAGGGCCTTGCTAATTAGCAGATGAGGCTGGAACTTCCTT
ATATATCTTTAGCTATTTAGAATGTTAACTCCTAACAGGTGGAGGTCATCTTGGAAGGAT
GATGATAAGAGCCTTGTCAGTATCATTGAGGGAACATGGATGATAGGATTTTTGTGCCTT
CATCAGACTTTTTCCAAGACAAAGATAATTTTATTTTGATAGTATAAGACTCTGGGACTC
TGGGAATAAGTTGGCCACATGCTTTAGGACATAGAGCTCTATGGAACTGAGTTCCTTTTA
TTTTGTGAAAGCTGCTACTCTATGGAAAGACTTCGATTTAGTAGTTTGTTTTTAATCCCC
TTTTATATTCCTATTTGTTAAGACCTGATCTGAGTATGACAAAAGCTATTCCTCCCCAAA
TATAAGTAGTCTTGTGTTCTGTTGGAATCTTTCATTCATTGAAAGATTTGTTTTCAGGTT
TACCAACTGCTTATTTTCACTGACATTTGACCATTATTATAGATATATTTTTTAAGTGAT
AAGATTCCAGGTGGGAATTGAGTGCTTTTTGTCCTTTTAATTTTTATTTTAGAAGTGATA
TCAGTTTGGGAGTTCCCATTGTGGCATAGCAGAAACAAATCCAACTAGTTATCCATGAGG
ACGTGGGTTGGATCCCTGGCCTTGCTCAGTAGGTTAAAGATCCAGTGTTGCTGTGAGCTG
TGGTGTAGGTCGCAGACACGGCTGGGACCCTGTTTTACAGTGGCTGTGGTATAGGCCAGA
AGCTGAAACTCTTGATTTGACCCCTAGCCTAGGAACTTCCATATGTCTCAAGTGTGGCCC
TGAAAAAGAAAGGAAAAAAAAAATTATGTCAGTTAAAAAAACTCCACTTCAGGGTTATGG
TTTAGTAAACTTGTTTTGCTCTGTGGAGGAAAGAATGTTAAATTTGATAATTTTAAAACA
TGTTTCTCTAAGGTTAAACATGATTTATAAATGTTATTTTCACTTGTATGTTGCTTTTGT
TATGGCCAAATATTCAACTTGTTTTTCATAGTTCTGATGTTTTCAGAAAAATTAAAATAA
ATTTATTCCCCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCCAATACTGGTGTGTGACTGGGTGAGGAACCCTTTCTCAAAATTTCAGCCTGAG
GTTTTTGTTTTTGAGAAGAGGAAGAACTCTTGAGAGTCCTAGTCTGACAGTCGTGGATTT
CTCTGAAACCAGAGTTGCTTATTGTTGACACTCACATATGTTGATGGTTCCCTTAACTTC
AATGTTTTTTTTAAGGGTTCCTCCAGGGTAAAATTACTAAACAAGGTGGAAGAGACAGAC
ACTGTGGAAACTAATGGAAAAAAGCTGGAAGAGGGCTTCAAAATAAACTGTCTGGATTGA
GAATACTATGGGGTTGTGAAATTAGCTTGTGGAGTTGGATATATTCTTAAGTTTTAAAAA
TTTTAGTAGTGGTGGTTCTTCCTGCACCAATGGCTATATTTGTTTATTGGCAAGTGAACA
TAGAAATATATTTTTATCCTCCTAGCTAGCGTTCCTGCTAAGTCAGACTAGAAGGATTTG
GGAAGGGCAAAGATAATTGAAAGGGCCTTGCTAATTAGCAGATGAGGCTGGAACTTCCTT
ATATATCTTTAGCTATTTAGAATGTTAACTCCTAACAGGTGGAGGTCATCTTGGAAGGAT
GATGATAAGAGCCTTGTCAGTATCATTGAGGGAACATGGATGATAGGATTTTTGTGCCTT
CATCAGACTTTTTCCAAGACAAAGATAATTTTATTTTGATAGTATAAGACTCTGGGACTC
TGGGAATAAGTTGGCCACATGCTTTAGGACATAGAGCTCTATGGAACTGAGTTCCTTTTA
TTTTGTGAAAGCTGCTACTCTATGGAAAGACTTCGATTTAGTAGTTTGTTTTTAATCCCC
TTTTATATTCCTATTTGTTAAGACCTGATCTGAGTATGACAAAAGCTATTCCTCCCCAAA
TATAAGTAGTCTTGTGTTCTGTTGGAATCTTTCATTCATTGAAAGATTTGTTTTCAGGTT
TACCAACTGCTTATTTTCACTGACATTTGACCATTATTATAGATATATTTTTTAAGTGAT
AAGATTCCAGGTGGGAATTGAGTGCTTTTTGTCCTTTTAATTTTTATTTTAGAAGTGATA
TCAGTTTGGGAGTTCCCATTGTGGCATAGCAGAAACAAATCCAACTAGTTATCCATGAGG
ACGTGGGTTGGATCCCTGGCCTTGCTCAGTAGGTTAAAGATCCAGTGTTGCTGTGAGCTG
TGGTGTAGGTCGCAGACACGGCTGGGACCCTGTTTTACAGTGGCTGTGGTATAGGCCAGA
AGCTGAAACTCTTGATTTGACCCCTAGCCTAGGAACTTCCATATGTCTCAAGTGTGGCCC
TGAAAAAGAAAGGAAAAAAAAAATTATGTCAGTTAAAAAAACTCCACTTCAGGGTTATGG
TTTAGTAAACTTGTTTTGCTCTGTGGAGGAAAGAATGTTAAATTTGATAATTTTAAAACA
TGTTTCTCTAAGGTTAAACATGATTTATAAATGTTATTTTCACTTGTATGTTGCTTTTGT
TATGGCCAAATATTCAACTTGTTTTTCATAGTTCTGATGTTTTCAGAAAAATTAAAATAA
ATTTATTCCCCAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               534-885, gnl|bosTau2|chrX (47717855-47718192)
               

               
               534-885, gnl|Hg17|chr21 (29192880-29192536)
               


               
               1338-1583, gnl|bosTau2|chrX (47719251-47719493)
               

               
               1338-1583, gnl|Hg17|chr21 (29192352-29192107)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               534-885, gnl|bosTau2|chrX (47717855-47718192)
               

               
               534-885, gnl|Hg17|chr21 (29192880-29192536)
               


               
               1338-1583, gnl|bosTau2|chrX (47719251-47719493)
               

               
               1338-1583, gnl|Hg17|chr21 (29192352-29192107)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               csk (0.422238)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

	534-885, gnl\|bosTau2\|chrX (47717855-47718192)
	534-885, gnl\|Hg17\|chr21 (29192880-29192536)

	1338-1583, gnl\|bosTau2\|chrX (47719251-47719493)
	1338-1583, gnl\|Hg17\|chr21 (29192352-29192107)

	csk (0.422238)
	duo (0.345602)
	vin (0.332557)
	cty (0.31224)
	sme (0.305437)
	cte (0.29274)
	fce (0.271592)
	tra (0.246184)
	ldo (0.194005)
	nlu (0.191681)
	rec (0.17307)
	cut (0.169924)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	lin (0.145603)
	che (0.136314)
	eru (0.120048)
	clu (0.119646)