Non-Coding RNA Search

Ss1.1-rduo416b_e6.5.5

Sequence:


               
               GCGCTGAGGAGCGAGGGCTTCGTCCTGGGTTTGGGGGAAGTGAGGAGATTGGGGCGGGAG
GGCGCAGTTGGCCTCGTTCCTAAACACCAAGAAGGACTCCCTTCCCAACTCCTACCCCAA
ACCGTCCTGTGACCGTGAGCGGTAATTAGGGGGGAGGGGAACGCCTGCAAAGTGTCCCAG
TTGGCCCTTGTCTAGGCAAGTAAATTTCTGTGAGGACGGCCAGCTACCGTCTCTTTTCAT
CGCTATGGTAGGGTTTGTATTGGCAAGGAGAATGAGGGAGTCGCGTGTACTTTCTAGAAT
ATGAGGACTTGACCCTGTCTCGCATATTCCAGAGCCCGATGCATTTCCAGACCCATAAAT
GGGCGCAGTTGGCCTCGTTCCTAATGTGTTTCTCTTACTCCCTTCCCAACTCCTACCCCA
AACCGTCCTGTGTGGGTTTGGGGTCCTGCAGAGTAACGACTTAAATCCAAGGTCATGGCA
AATCATCTGAAGTTCATTGCCAGGACTGTGATGGTACAGGAAGGGAACGTGGAAGGTGCA
TACAGGACCCTAAACAGAATCCTCACCATGGATGGGCTGATTGAGGACATAAAGCGGCGG
CGGTACTATGAGAAGCCTTGCCGTCGGCGACAGAGGGAAAGCTATGAAACCTGCCGGCGA
ATCTACAACATGGAAATGGCTCGCAAGATCAATTTCTTGATGCGAAAGAATCGGGCAGAT
CCATGGCAGGGCTGCTGAGGCCTGTGATGAGGAGGCCCAATATAAAAACCCTTATTCATT
TGTCTCCACCTCTTTTCTTTCTACAACCCCATTTTCTCTCACCTTTATTACATTAAACCC
AATCATGTATATACAAAAAAAAAAGCGTATGTAGGACCAATACCACTAGTCAGGAGTGGA
CCCTCTCTTTTATTAAATCAAAGAGGAACTGAGTCAAAAAGAGTATAATGATGGTTGCCA
AAAAAGCTAGTGTTGGGAGTAGGGGAATGAGAAATTATTGTTTAATGAATATTGAGTTTC
AATTTGGGAAGATGAAAAGGTTCTGAAGGTGGATGATAGTGATAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTGAGGAGCGAGGGCTTCGTCCTGGGTTTGGGGGAAGTGAGGAGATTGGGGCGGGAG
GGCGCAGTTGGCCTCGTTCCTAAACACCAAGAAGGACTCCCTTCCCAACTCCTACCCCAA
ACCGTCCTGTGACCGTGAGCGGTAATTAGGGGGGAGGGGAACGCCTGCAAAGTGTCCCAG
TTGGCCCTTGTCTAGGCAAGTAAATTTCTGTGAGGACGGCCAGCTACCGTCTCTTTTCAT
CGCTATGGTAGGGTTTGTATTGGCAAGGAGAATGAGGGAGTCGCGTGTACTTTCTAGAAT
ATGAGGACTTGACCCTGTCTCGCATATTCCAGAGCCCGATGCATTTCCAGACCCATAAAT
GGGCGCAGTTGGCCTCGTTCCTAATGTGTTTCTCTTACTCCCTTCCCAACTCCTACCCCA
AACCGTCCTGTGTGGGTTTGGGGTCCTGCAGAGTAACGACTTAAATCCAAGGTCATGGCA
AATCATCTGAAGTTCATTGCCAGGACTGTGATGGTACAGGAAGGGAACGTGGAAGGTGCA
TACAGGACCCTAAACAGAATCCTCACCATGGATGGGCTGATTGAGGACATAAAGCGGCGG
CGGTACTATGAGAAGCCTTGCCGTCGGCGACAGAGGGAAAGCTATGAAACCTGCCGGCGA
ATCTACAACATGGAAATGGCTCGCAAGATCAATTTCTTGATGCGAAAGAATCGGGCAGAT
CCATGGCAGGGCTGCTGAGGCCTGTGATGAGGAGGCCCAATATAAAAACCCTTATTCATT
TGTCTCCACCTCTTTTCTTTCTACAACCCCATTTTCTCTCACCTTTATTACATTAAACCC
AATCATGTATATACAAAAAAAAAAGCGTATGTAGGACCAATACCACTAGTCAGGAGTGGA
CCCTCTCTTTTATTAAATCAAAGAGGAACTGAGTCAAAAAGAGTATAATGATGGTTGCCA
AAAAAGCTAGTGTTGGGAGTAGGGGAATGAGAAATTATTGTTTAATGAATATTGAGTTTC
AATTTGGGAAGATGAAAAGGTTCTGAAGGTGGATGATAGTGATAGTTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5TB11_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TB11_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               441-851, gnl|bosTau2|chr23 (16485177-16485585)
               

               
               441-851, gnl|Hg17|chr1 (154644035-154644437)
               

               
               441-851, gnl|Mm7|chrX (154184906-154184522)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               441-851, gnl|bosTau2|chr23 (16485177-16485585)
               

               
               441-851, gnl|Hg17|chr1 (154644035-154644437)
               

               
               441-851, gnl|Mm7|chrX (154184906-154184522)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

Help | Less info


               
               che (0.545256)
               

               
               sto (0.539471)
               

               
               cje (0.495704)
               

               
               hea (0.408998)
               

               
               nlu (0.383362)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.545256)
               

               
               sto (0.539471)
               

               
               cje (0.495704)
               

               
               hea (0.408998)
               

               
               nlu (0.383362)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	441-851, gnl\|bosTau2\|chr23 (16485177-16485585)
	441-851, gnl\|Hg17\|chr1 (154644035-154644437)
	441-851, gnl\|Mm7\|chrX (154184906-154184522)

	che (0.545256)
	sto (0.539471)
	cje (0.495704)
	hea (0.408998)
	nlu (0.383362)
	duo (0.345602)
	sme (0.305437)
	jej (0.296765)
	cst (0.280073)
	cbe (0.239234)
	spc (0.226732)
	nms (0.213858)
	fli (0.202881)
	col (0.195008)
	cmu (0.186393)
	rec (0.17307)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	cli (0.152812)
	cag (0.151194)
	bfe (0.149858)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	nmm (0.132802)
	cov (0.132153)
	thg (0.126791)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	eje (0.0988338)