Non-Coding RNA Search

Ss1.1-rduo416b_j9.5

Sequence:


               
               GTAAGGCACAGCCGGGAATGATCCTTTCTGGGAGTTTAAGGTGGAGGTAGGGATTGAGGA
CTAAAGTACATGAATATTTGCAGGGAGAAGGAACTGGCAAAAGTCACCATCAAGAAGGAA
GATCTGGAGCTGATAGTGAGTAATAATGTCTAACTAGTGTGTGAACCGGGAAGGTTAGTT
TGATTTGGGTTGTTTCCTGAAACAGCATGATTTGCTGCCACATTAATGCACTGGAGGAAA
CTTAGCTAATATTGATCCTTTTCTTGCAGATGACAGAGATGGAGATCTCTCGAGCAGCAG
CAGAACGGAGTTTGAGAGAACACATGGGCAACGTGGTAGAGGCTCTTATTGCCCTGACCA
ACTGATTTGTGCTTTCTCAGACATACCCACTGGATTAACTTATTTCAATAAAGATGCCTT
CTTTTTCTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAGGCACAGCCGGGAATGATCCTTTCTGGGAGTTTAAGGTGGAGGTAGGGATTGAGGA
CTAAAGTACATGAATATTTGCAGGGAGAAGGAACTGGCAAAAGTCACCATCAAGAAGGAA
GATCTGGAGCTGATAGTGAGTAATAATGTCTAACTAGTGTGTGAACCGGGAAGGTTAGTT
TGATTTGGGTTGTTTCCTGAAACAGCATGATTTGCTGCCACATTAATGCACTGGAGGAAA
CTTAGCTAATATTGATCCTTTTCTTGCAGATGACAGAGATGGAGATCTCTCGAGCAGCAG
CAGAACGGAGTTTGAGAGAACACATGGGCAACGTGGTAGAGGCTCTTATTGCCCTGACCA
ACTGATTTGTGCTTTCTCAGACATACCCACTGGATTAACTTATTTCAATAAAGATGCCTT
CTTTTTCTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-193, - strand, RNAz p=0.758103

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-193, - strand, RNAz p=0.758103

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-424, gnl|bosTau2|chr21 (34528740-34529157)
               

               
               1-424, gnl|Hg17|chr15 (41880923-41881355)
               

               
               1-424, gnl|Mm7|chr2 (121198761-121199166)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-424, gnl|bosTau2|chr21 (34528740-34529157)
               

               
               1-424, gnl|Hg17|chr15 (41880923-41881355)
               

               
               1-424, gnl|Mm7|chr2 (121198761-121199166)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

	1-424, gnl\|bosTau2\|chr21 (34528740-34529157)
	1-424, gnl\|Hg17\|chr15 (41880923-41881355)
	1-424, gnl\|Mm7\|chr2 (121198761-121199166)