Ss1.1-rduo416b_l19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCACAATGTTCGGGAGGATATCGTGAATGACATTACAGCTGAACACATTTCTATTTGG CCATCGTCCATCCCCAACCTCCAGTCAGTGGACTTTGAAGCAGTGGCGATCACAGTGAAA GAGCTAGTTCGGTATGCCCTCAGTATAAACCCAAACAACCATTCATGGTTAATTATTCAG GCCGACATTTATTTTGCAACGAATCAGTATTCAGCAGCTCTTCACTATTACCTCCAAGCA GGGGCCGTGTGTTCTGATTTCTTTAATAAGGCTGTGCCCCCAGATGTTTATACAGACCAG GTAATAAAACGAATGATAAAGTGCTGTTCTTTGCTGAATTGCCACACGCAGGTGGCAATT TTATGTCAGTTCCTCAGAGAGATTGACTATAAAACAGCTTTTAAATCACTGCAGGAACAA AACAGTCATGATGCTATGGACTCCTACTATGACTACATATGGGATGTTACCATTTTGGAA TACTTGACTTATCTTCATCATAAAAGAGGAGAAACAGATAAAAGGCAAATTGCGATCAAA GCCATCGGCCAGACTGAATTGAATGCAAGCAACCCAGAAGAAGTGTTGCAGCTGGCAGCG CAAAGAAGGAAAAAAAAGTTTCTCCAAGCAATGGCAAAACTTTACTTTTAAGCAGTTAGT TAAAATTTTTTAACTTTTATTTTTTAAACAATGGGCTAAAAATAAACAGTATTAAAAGAT TAAGTTTATATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCACAATGTTCGGGAGGATATCGTGAATGACATTACAGCTGAACACATTTCTATTTGG CCATCGTCCATCCCCAACCTCCAGTCAGTGGACTTTGAAGCAGTGGCGATCACAGTGAAA GAGCTAGTTCGGTATGCCCTCAGTATAAACCCAAACAACCATTCATGGTTAATTATTCAG GCCGACATTTATTTTGCAACGAATCAGTATTCAGCAGCTCTTCACTATTACCTCCAAGCA GGGGCCGTGTGTTCTGATTTCTTTAATAAGGCTGTGCCCCCAGATGTTTATACAGACCAG GTAATAAAACGAATGATAAAGTGCTGTTCTTTGCTGAATTGCCACACGCAGGTGGCAATT TTATGTCAGTTCCTCAGAGAGATTGACTATAAAACAGCTTTTAAATCACTGCAGGAACAA AACAGTCATGATGCTATGGACTCCTACTATGACTACATATGGGATGTTACCATTTTGGAA TACTTGACTTATCTTCATCATAAAAGAGGAGAAACAGATAAAAGGCAAATTGCGATCAAA GCCATCGGCCAGACTGAATTGAATGCAAGCAACCCAGAAGAAGTGTTGCAGCTGGCAGCG CAAAGAAGGAAAAAAAAGTTTCTCCAAGCAATGGCAAAACTTTACTTTTAAGCAGTTAGT TAAAATTTTTTAACTTTTATTTTTTAAACAATGGGCTAAAAATAAACAGTATTAAAAGAT TAAGTTTATATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 78-196, gnl|bosTau2|chr14 (42820151-42820269) | |
| 78-196, gnl|canFam2|chr29 (42508858-42509031) | |
| 78-196, gnl|danRer3|chr19 (14413018-14413156) | |
| 78-196, gnl|dasNov1|scaffold_35838 (35593-35761) | |
| 78-196, gnl|echTel1|scaffold_306481 (76384-76552) | |
| 78-196, gnl|fr1|chrUn (215145445-215145303) | |
| 78-196, gnl|hg17|chr8 (95953269-95953435) | |
| 78-196, gnl|Hg17|chr8 (95953288-95953406) | |
| 78-196, gnl|loxAfr1|scaffold_52720 (6950-7118) | |
| 78-196, gnl|mm7|chr4 (11143737-11143579) | |
| 78-196, gnl|Mm7|chr4 (11143722-11143604) | |
| 78-196, gnl|monDom2|scaffold_3 (70736624-70736446) | |
| 78-196, gnl|oryCun1|scaffold_200949 (24908-24743) | |
| 78-196, gnl|panTro1|chr7 (98187127-98187293) | |
| 78-196, gnl|rheMac2|chr8 (97445389-97445555) | |
| 78-196, gnl|rn3|chr5 (25055733-25055575) | |
| 78-196, gnl|tetNig1|chr21 (593668-593809) | |
| 78-196, gnl|xenTro1|scaffold_3 (6269231-6269066) | |
| 534-735, gnl|bosTau2|chr14 (42827733-42827933) | |
| 534-735, gnl|Hg17|chr8 (95961521-95961718) | |
| 534-735, gnl|Mm7|chr4 (11131731-11131530) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-196, gnl|bosTau2|chr14 (42820151-42820269) | |
| 78-196, gnl|canFam2|chr29 (42508858-42509031) | |
| 78-196, gnl|danRer3|chr19 (14413018-14413156) | |
| 78-196, gnl|dasNov1|scaffold_35838 (35593-35761) | |
| 78-196, gnl|echTel1|scaffold_306481 (76384-76552) | |
| 78-196, gnl|fr1|chrUn (215145445-215145303) | |
| 78-196, gnl|hg17|chr8 (95953269-95953435) | |
| 78-196, gnl|Hg17|chr8 (95953288-95953406) | |
| 78-196, gnl|loxAfr1|scaffold_52720 (6950-7118) | |
| 78-196, gnl|mm7|chr4 (11143737-11143579) | |
| 78-196, gnl|Mm7|chr4 (11143722-11143604) | |
| 78-196, gnl|monDom2|scaffold_3 (70736624-70736446) | |
| 78-196, gnl|oryCun1|scaffold_200949 (24908-24743) | |
| 78-196, gnl|panTro1|chr7 (98187127-98187293) | |
| 78-196, gnl|rheMac2|chr8 (97445389-97445555) | |
| 78-196, gnl|rn3|chr5 (25055733-25055575) | |
| 78-196, gnl|tetNig1|chr21 (593668-593809) | |
| 78-196, gnl|xenTro1|scaffold_3 (6269231-6269066) | |
| 534-735, gnl|bosTau2|chr14 (42827733-42827933) | |
| 534-735, gnl|Hg17|chr8 (95961521-95961718) | |
| 534-735, gnl|Mm7|chr4 (11131731-11131530) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cbe (0.717703) | |
| duo (0.518403) | |
| cmu (0.372787) | |
| ski (0.29347) | |
| lin (0.291206) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| spc (0.226732) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| liv (0.146284) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.717703) | |
| duo (0.518403) | |
| cmu (0.372787) | |
| ski (0.29347) | |
| lin (0.291206) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| spc (0.226732) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| liv (0.146284) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) |