Non-Coding RNA Search

Ss1.1-rduo419b_c12.5

Sequence:


               
               CAAGAGCGCCCTGCGGCCCAGCGGGCTGCGCCTGGGGACCCCGGCACTGACGTCCCGAGG
ACTCTTGGAAGAAGATTTCCAAGAAGTGGCCCGGTTTATTCACAGAGGGATAGAGCTGAC
CCTGCAGATCCAGGACGCCGTGGGTGCGAAGGCCACCCTGAAGGAGTTCATGGAGACGCT
GGCGGGGGCCGGGGAGCACCAGCGGGCCGTGGCGGCGCTCAGGGCGGAGGTGGAGAGCTT
CGCCGCCCTCTTCCCGCTGCCCGGCCTGCCCGACTTCTAGGCGCGCCCGCCAGCCCGCCC
TTGGCCCCAGCCCGGCCCGATGGCTTCCCTGTGCCTCCCAGGGCGTCTCTCTGGACTTTG
CTATGTTGCCTTCCTCACAAGCTAACATCTGTTAGAAGCTCGGTGTCAGTAATTCTGGGA
CAAGCTACTAAGGAGTTTAAACTTCAACCTCAGTGTCTCACAGCTACATAGAGAGTTATT
CTGCAAAAATAAACTACGATTTCGCCATTTAGCCATTACTTTCTCCGTTGGTGTAGGGCA
GGGCTACGAGGAAGATGCCAATTTTCCTCTCTGCTCTTAAAAGTCCTTGGGCTTAAGATA
AGAAACACCCAAGTCTGGAGTCCCCGCTGTGGCTCAGTGGTAAAGAGCCCGACTAGTACC
CATGCGGATGCAGGTTCGATCCCTGGCCTCGCTCAGTTGGTTAAGGATCCGACATCGCCA
TGAGCTGTGGTGCAGGTCGCAGGCGCGGCTGTGGCTGGCAGCTGCATCTCTGATTTTATC
TCCAGCCTGGGAACTTTCATATCCCTCAGGCGCACCCCTAAAAAGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAGCGCCCTGCGGCCCAGCGGGCTGCGCCTGGGGACCCCGGCACTGACGTCCCGAGG
ACTCTTGGAAGAAGATTTCCAAGAAGTGGCCCGGTTTATTCACAGAGGGATAGAGCTGAC
CCTGCAGATCCAGGACGCCGTGGGTGCGAAGGCCACCCTGAAGGAGTTCATGGAGACGCT
GGCGGGGGCCGGGGAGCACCAGCGGGCCGTGGCGGCGCTCAGGGCGGAGGTGGAGAGCTT
CGCCGCCCTCTTCCCGCTGCCCGGCCTGCCCGACTTCTAGGCGCGCCCGCCAGCCCGCCC
TTGGCCCCAGCCCGGCCCGATGGCTTCCCTGTGCCTCCCAGGGCGTCTCTCTGGACTTTG
CTATGTTGCCTTCCTCACAAGCTAACATCTGTTAGAAGCTCGGTGTCAGTAATTCTGGGA
CAAGCTACTAAGGAGTTTAAACTTCAACCTCAGTGTCTCACAGCTACATAGAGAGTTATT
CTGCAAAAATAAACTACGATTTCGCCATTTAGCCATTACTTTCTCCGTTGGTGTAGGGCA
GGGCTACGAGGAAGATGCCAATTTTCCTCTCTGCTCTTAAAAGTCCTTGGGCTTAAGATA
AGAAACACCCAAGTCTGGAGTCCCCGCTGTGGCTCAGTGGTAAAGAGCCCGACTAGTACC
CATGCGGATGCAGGTTCGATCCCTGGCCTCGCTCAGTTGGTTAAGGATCCGACATCGCCA
TGAGCTGTGGTGCAGGTCGCAGGCGCGGCTGTGGCTGGCAGCTGCATCTCTGATTTTATC
TCCAGCCTGGGAACTTTCATATCCCTCAGGCGCACCCCTAAAAAGACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|5830444|emb|CAB54842.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5830444|emb|CAB54842.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               103-555, gnl|bosTau2|chr19 (26663495-26663058)
               

               
               103-555, gnl|Hg17|chr17 (18172963-18172458)
               

               
               103-555, gnl|Mm7|chr11 (60870879-60870275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-555, gnl|bosTau2|chr19 (26663495-26663058)
               

               
               103-555, gnl|Hg17|chr17 (18172963-18172458)
               

               
               103-555, gnl|Mm7|chr11 (60870879-60870275)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cli (1.06968)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.06968)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	103-555, gnl\|bosTau2\|chr19 (26663495-26663058)
	103-555, gnl\|Hg17\|chr17 (18172963-18172458)
	103-555, gnl\|Mm7\|chr11 (60870879-60870275)

	cli (1.06968)
	col (0.195008)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	lun (0.150489)
	hyp (0.142837)
	cov (0.132153)
	med (0.116252)