Non-Coding RNA Search

Ss1.1-rduo419b_n2.5

Sequence:


               
               CAACCTACACCACAGCTCACGGCAACGCCGGACCGTTAACCCACTGAGCAAGGCCAGGGA
CTGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACCCATTTTTTTCTTTCT
TTTTTTTTCTAATGGTTGTACCCACAGCCTATAGAAGTTCCTGAGCCAGGGACTGAATCT
GAGCGACAGCTGCAGCATTGCTGTATCCTTTAACCCACTGTGCTGGGCCAAGGATGGAAC
CTGTGCCTCTGAAGCCACCCCAGCCACTGCAGTCAGATTCTTAACCTATTGCACCACAGT
GGGAACTTCCACACGTTAATTTTTTTTTTATCAGATAGTAATAGTTAATATTATGTACTT
AATTTTGTCTCTTTTATAAGTAACTGTTAGCATATCTATTTTATAATTGAAAAAAAGGAT
GCACAGAGAGGATAAGTTCCTTGACAAAAGTCACATAATTAATAAGTAGAAGTGCTGAGA
TTTGAAGGAGTTAGTCTAGCTGCACAATTGTTATGCCCTGGAAATACACTATGTCCTACA
AGGGTCTTCCCCTCCATGGAGCAGGTTGAAGAATTCCCATTATTCCGAGCTTCTCTTGGA
ACTGGATTCCTGCACAGTACTCAAAGCAGATTTCCTCTGAGGAAGTCTTGTTTGAAGAGC
CTAAAAACCTAGAATCTGTTTCTTTGTCCAGAGAGTTGAGGAAGCTTAAGGTAATGATGT
ATCTTAAAAAAAAACAGATTAGACATTTAGTTTTTGATGATTCACTAAAGTCTTGCAGTT
ACGATTATTTTGTATCTACTGATATTTTAGCTAAATGTGCTTCAAAAAAGTCAAAGTTTG
ATTTCCTGCCTGCTAAGTTCTGGATCTTTGATTACAACATGTGTGCTTAGGCAAGTTTCA
TTTAGTGCGAGTGGTTGGCAAGCCTTTGGATTACTGCCTTTGCTCTGTGGAAAGTACTAT
CATCTGTATCTGTTATAAATAAAGTTATATACATATTAGGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCTACACCACAGCTCACGGCAACGCCGGACCGTTAACCCACTGAGCAAGGCCAGGGA
CTGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACCCATTTTTTTCTTTCT
TTTTTTTTCTAATGGTTGTACCCACAGCCTATAGAAGTTCCTGAGCCAGGGACTGAATCT
GAGCGACAGCTGCAGCATTGCTGTATCCTTTAACCCACTGTGCTGGGCCAAGGATGGAAC
CTGTGCCTCTGAAGCCACCCCAGCCACTGCAGTCAGATTCTTAACCTATTGCACCACAGT
GGGAACTTCCACACGTTAATTTTTTTTTTATCAGATAGTAATAGTTAATATTATGTACTT
AATTTTGTCTCTTTTATAAGTAACTGTTAGCATATCTATTTTATAATTGAAAAAAAGGAT
GCACAGAGAGGATAAGTTCCTTGACAAAAGTCACATAATTAATAAGTAGAAGTGCTGAGA
TTTGAAGGAGTTAGTCTAGCTGCACAATTGTTATGCCCTGGAAATACACTATGTCCTACA
AGGGTCTTCCCCTCCATGGAGCAGGTTGAAGAATTCCCATTATTCCGAGCTTCTCTTGGA
ACTGGATTCCTGCACAGTACTCAAAGCAGATTTCCTCTGAGGAAGTCTTGTTTGAAGAGC
CTAAAAACCTAGAATCTGTTTCTTTGTCCAGAGAGTTGAGGAAGCTTAAGGTAATGATGT
ATCTTAAAAAAAAACAGATTAGACATTTAGTTTTTGATGATTCACTAAAGTCTTGCAGTT
ACGATTATTTTGTATCTACTGATATTTTAGCTAAATGTGCTTCAAAAAAGTCAAAGTTTG
ATTTCCTGCCTGCTAAGTTCTGGATCTTTGATTACAACATGTGTGCTTAGGCAAGTTTCA
TTTAGTGCGAGTGGTTGGCAAGCCTTTGGATTACTGCCTTTGCTCTGTGGAAAGTACTAT
CATCTGTATCTGTTATAAATAAAGTTATATACATATTAGGAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               502-697, - strand, RNAz p=0.740818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               502-697, - strand, RNAz p=0.740818

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               383-1002, gnl|bosTau2|chr1 (39299850-39299232)
               

               
               383-1002, gnl|Hg17|chr3 (123776119-123776736)
               

               
               383-1002, gnl|Mm7|chr16 (35601324-35600728)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               383-1002, gnl|bosTau2|chr1 (39299850-39299232)
               

               
               383-1002, gnl|Hg17|chr3 (123776119-123776736)
               

               
               383-1002, gnl|Mm7|chr16 (35601324-35600728)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               duo (0.518403)
               

               
               pan (0.471921)
               

               
               jej (0.296765)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               pan (0.471921)
               

               
               jej (0.296765)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	383-1002, gnl\|bosTau2\|chr1 (39299850-39299232)
	383-1002, gnl\|Hg17\|chr3 (123776119-123776736)
	383-1002, gnl\|Mm7\|chr16 (35601324-35600728)

	duo (0.518403)
	pan (0.471921)
	jej (0.296765)
	col (0.195008)
	ill (0.175593)
	sin (0.174948)
	lin (0.145603)
	lnt (0.142308)
	lyg (0.133103)
	thg (0.126791)
	cbl (0.114797)
	jca (0.11396)
	ldo (0.0970026)