Non-Coding RNA Search

Ss1.1-rduo422b_k24.5

Sequence:


               
               CTCAGGTGACCTGACTTGTTCAGAAGGAAGAGATGCTGCTCCGGCCCTGGGGGCTGAAGT
CCAAGCCCAGGACTTAAGACACCCACCCAGAGCTGTAAGACTTCTTCCCACTCTAGCTCT
CCTACCAGCCTAGTTCCATTTTTTGCCTCTGCTCTCGGATCCTATAGGTCCATGGAGGGG
CAAGCAATAAGACCCCCTCCCCTCAGACCTCTTCCTAATAACTGAAGGGAAGGGTATTTT
ATTTTATTATTTTTTTTTTCTTTTGAAGCACTAGGTGAAAGCTGAGGTAGGCCGTCATCA
TCCCCCTTTTCGCTTGGGCCCTGATACCTAAAACCTTCCGTTGGTTCATCTGTGGAGCTC
ATTCCTTTCCCACCAAGAGTCCATCTTGCTGCCTCCTGCCAGCTGCCTCAGTGCTTCCTC
CAGGGGCCATAATGTCTTGCCTCGCCTGAGGGCCAGTGCTTCTGCTGTGTTAGTTTACTT
GCCAGAACAAATTAAAATTTCCAGAGAGTCCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGTGACCTGACTTGTTCAGAAGGAAGAGATGCTGCTCCGGCCCTGGGGGCTGAAGT
CCAAGCCCAGGACTTAAGACACCCACCCAGAGCTGTAAGACTTCTTCCCACTCTAGCTCT
CCTACCAGCCTAGTTCCATTTTTTGCCTCTGCTCTCGGATCCTATAGGTCCATGGAGGGG
CAAGCAATAAGACCCCCTCCCCTCAGACCTCTTCCTAATAACTGAAGGGAAGGGTATTTT
ATTTTATTATTTTTTTTTTCTTTTGAAGCACTAGGTGAAAGCTGAGGTAGGCCGTCATCA
TCCCCCTTTTCGCTTGGGCCCTGATACCTAAAACCTTCCGTTGGTTCATCTGTGGAGCTC
ATTCCTTTCCCACCAAGAGTCCATCTTGCTGCCTCCTGCCAGCTGCCTCAGTGCTTCCTC
CAGGGGCCATAATGTCTTGCCTCGCCTGAGGGCCAGTGCTTCTGCTGTGTTAGTTTACTT
GCCAGAACAAATTAAAATTTCCAGAGAGTCCAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-207, gnl|bosTau2|chr13 (34335610-34335819)
               

               
               1-207, gnl|Hg17|chr17 (59134434-59134240)
               

               
               1-207, gnl|Mm7|chr11 (106272836-106272646)
               


               
               253-521, gnl|bosTau2|chr13 (34336077-34336348)
               

               
               253-521, gnl|Hg17|chr17 (59134193-59133937)
               

               
               253-521, gnl|Mm7|chr11 (106272605-106272372)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-207, gnl|bosTau2|chr13 (34335610-34335819)
               

               
               1-207, gnl|Hg17|chr17 (59134434-59134240)
               

               
               1-207, gnl|Mm7|chr11 (106272836-106272646)
               


               
               253-521, gnl|bosTau2|chr13 (34336077-34336348)
               

               
               253-521, gnl|Hg17|chr17 (59134193-59133937)
               

               
               253-521, gnl|Mm7|chr11 (106272605-106272372)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               jca (0.11396)

	1-207, gnl\|bosTau2\|chr13 (34335610-34335819)
	1-207, gnl\|Hg17\|chr17 (59134434-59134240)
	1-207, gnl\|Mm7\|chr11 (106272836-106272646)

	253-521, gnl\|bosTau2\|chr13 (34336077-34336348)
	253-521, gnl\|Hg17\|chr17 (59134193-59133937)
	253-521, gnl\|Mm7\|chr11 (106272605-106272372)