Non-Coding RNA Search

Ss1.1-rduo424b_i23.5

Sequence:


               
               CTTTTCTAGTGGAGGTGGACCATTTGTAAAATTAAACACAGCACCTAATGGCAGCTTAAT
ACTAACAGCAAGTGAACAGTGCTTTGAGGATTCACTGATTTTGTTACAGTGTAACCATAA
ATCATGTGGAAAAAAACAGGTGGCTCAAGAAGTCAGTCCAAAGATTGTTGGAGGAAATGA
TTCCAGAGAAGGAGCCTGGCCCTGGGTTGTTGCTCTGTATTACAACGGCCAACTGCTCTG
CGGAGCTTCCCTCGTCAGCAGGGACTGGCTGGTGTCCGCTGCCCACTGCGTCTATGGGAG
AAATTTAGAGCCATCTAAATGGAAAGCAATCCTAGGCCTTCACATGACATCGAATCTGAC
TTCTCCACAAATAGTAACTCGTTTGATCGATGAAATTGTCATAAACCCACATTACAACAG
ACGGAGAAAGGACAGTGACATCGCCATGATGCATCTTGAATTTAAAGTGAACTACACAGA
TTACATACAACCTATTTGTTTACCAGAAGAAAATCAAGTTTTTCCTCCAGGAAGAATTTG
TTCTATTGCTGGCTGGGGGAAGGTTATATATCAAGGTTCTCCTGCAGACATACTGCAAGA
AGCTGATGTTCCCCTTCTATCAAATGAGAAATGCCAACAGCAGATGCCAGAATATAACAT
TACTGAAAATATGATGTGTGCAGGCTATGAAGAAGGAGGGATAGATTCTTGTCAGGGGGA
TTCAGGAGGGCCACTAATGTGCCTTGAAAACAACAGATGGCTCCTGGCTGGTGTGACATC
ATTTGGATACCAGTGTGCACTGCCTAATCGCCCAGGGGTGTACGCCCGGGTCCCGAAGTT
CACAGAGTGGATACAGAGTTTTCTCCATTAGAGTTTCCTAAAGAAATGATGAAAATCAGG
CAGTTTTCCCATTCCACTTTTAAGAAGCATGGAAATTGAGAGATTTGAAAAAAAGTGTCT
CTAAAAGCCTTTACTCTTACCTATGCTACTGAAATGCTGGGAGAAAAAATATATCATACA
AAGTAACTTGTAATTTTGATTTTTTGTCAATGGCTGTTCTTTCAGAGACATCATTATTTC
CTTTGTTTCTAATCATTTTTATCATCTCTTAAAGGAATGTTATTTTAAAGCATATACTAT
TAAAGTTTAAGCAAAACTAGGAAAAGAGGTGAAATAAACTGTTTTGCATAAATTATGTTA
CTGTTTGAAATAAACTACTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCTAGTGGAGGTGGACCATTTGTAAAATTAAACACAGCACCTAATGGCAGCTTAAT
ACTAACAGCAAGTGAACAGTGCTTTGAGGATTCACTGATTTTGTTACAGTGTAACCATAA
ATCATGTGGAAAAAAACAGGTGGCTCAAGAAGTCAGTCCAAAGATTGTTGGAGGAAATGA
TTCCAGAGAAGGAGCCTGGCCCTGGGTTGTTGCTCTGTATTACAACGGCCAACTGCTCTG
CGGAGCTTCCCTCGTCAGCAGGGACTGGCTGGTGTCCGCTGCCCACTGCGTCTATGGGAG
AAATTTAGAGCCATCTAAATGGAAAGCAATCCTAGGCCTTCACATGACATCGAATCTGAC
TTCTCCACAAATAGTAACTCGTTTGATCGATGAAATTGTCATAAACCCACATTACAACAG
ACGGAGAAAGGACAGTGACATCGCCATGATGCATCTTGAATTTAAAGTGAACTACACAGA
TTACATACAACCTATTTGTTTACCAGAAGAAAATCAAGTTTTTCCTCCAGGAAGAATTTG
TTCTATTGCTGGCTGGGGGAAGGTTATATATCAAGGTTCTCCTGCAGACATACTGCAAGA
AGCTGATGTTCCCCTTCTATCAAATGAGAAATGCCAACAGCAGATGCCAGAATATAACAT
TACTGAAAATATGATGTGTGCAGGCTATGAAGAAGGAGGGATAGATTCTTGTCAGGGGGA
TTCAGGAGGGCCACTAATGTGCCTTGAAAACAACAGATGGCTCCTGGCTGGTGTGACATC
ATTTGGATACCAGTGTGCACTGCCTAATCGCCCAGGGGTGTACGCCCGGGTCCCGAAGTT
CACAGAGTGGATACAGAGTTTTCTCCATTAGAGTTTCCTAAAGAAATGATGAAAATCAGG
CAGTTTTCCCATTCCACTTTTAAGAAGCATGGAAATTGAGAGATTTGAAAAAAAGTGTCT
CTAAAAGCCTTTACTCTTACCTATGCTACTGAAATGCTGGGAGAAAAAATATATCATACA
AAGTAACTTGTAATTTTGATTTTTTGTCAATGGCTGTTCTTTCAGAGACATCATTATTTC
CTTTGTTTCTAATCATTTTTATCATCTCTTAAAGGAATGTTATTTTAAAGCATATACTAT
TAAAGTTTAAGCAAAACTAGGAAAAGAGGTGAAATAAACTGTTTTGCATAAATTATGTTA
CTGTTTGAAATAAACTACTGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6435698|pdb|1EKB|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6435698|pdb|1EKB|B

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               291-479, gnl|bosTau2|chr1 (9590582-9590770)
               

               
               291-479, gnl|canFam2|chr31 (17626222-17626432)
               

               
               291-479, gnl|dasNov1|scaffold_239490 (955-748)
               

               
               291-479, gnl|echTel1|scaffold_316596 (72543-72747)
               

               
               291-479, gnl|fr1|chrUn (138525807-138525610)
               

               
               291-479, gnl|galGal2|chr1 (93450957-93451164)
               

               
               291-479, gnl|hg17|chr21 (18575216-18575426)
               

               
               291-479, gnl|Hg17|chr21 (18575416-18575228)
               

               
               291-479, gnl|loxAfr1|scaffold_21536 (11205-10998)
               

               
               291-479, gnl|mm7|chr16 (78959144-78959351)
               

               
               291-479, gnl|Mm7|chr16 (78959341-78959153)
               

               
               291-479, gnl|monDom2|scaffold_29 (5289776-5289987)
               

               
               291-479, gnl|oryCun1|scaffold_212877 (94333-94125)
               

               
               291-479, gnl|panTro1|chr22 (18692273-18692483)
               

               
               291-479, gnl|rn3|chr11 (18029515-18029722)
               

               
               291-479, gnl|tetNig1|chr7 (10876733-10876934)
               

               
               291-479, gnl|xenTro1|scaffold_72 (305910-306137)
               


               
               714-1223, gnl|bosTau2|chr1 (9603204-9603745)
               

               
               714-1223, gnl|Hg17|chr21 (18564314-18563734)
               

               
               714-1223, gnl|Mm7|chr16 (78951096-78950548)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               291-479, gnl|bosTau2|chr1 (9590582-9590770)
               

               
               291-479, gnl|canFam2|chr31 (17626222-17626432)
               

               
               291-479, gnl|dasNov1|scaffold_239490 (955-748)
               

               
               291-479, gnl|echTel1|scaffold_316596 (72543-72747)
               

               
               291-479, gnl|fr1|chrUn (138525807-138525610)
               

               
               291-479, gnl|galGal2|chr1 (93450957-93451164)
               

               
               291-479, gnl|hg17|chr21 (18575216-18575426)
               

               
               291-479, gnl|Hg17|chr21 (18575416-18575228)
               

               
               291-479, gnl|loxAfr1|scaffold_21536 (11205-10998)
               

               
               291-479, gnl|mm7|chr16 (78959144-78959351)
               

               
               291-479, gnl|Mm7|chr16 (78959341-78959153)
               

               
               291-479, gnl|monDom2|scaffold_29 (5289776-5289987)
               

               
               291-479, gnl|oryCun1|scaffold_212877 (94333-94125)
               

               
               291-479, gnl|panTro1|chr22 (18692273-18692483)
               

               
               291-479, gnl|rn3|chr11 (18029515-18029722)
               

               
               291-479, gnl|tetNig1|chr7 (10876733-10876934)
               

               
               291-479, gnl|xenTro1|scaffold_72 (305910-306137)
               


               
               714-1223, gnl|bosTau2|chr1 (9603204-9603745)
               

               
               714-1223, gnl|Hg17|chr21 (18564314-18563734)
               

               
               714-1223, gnl|Mm7|chr16 (78951096-78950548)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               duo (0.864006)
               

               
               tes (0.207814)
               

               
               sin (0.174948)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.864006)
               

               
               tes (0.207814)
               

               
               sin (0.174948)

	291-479, gnl\|bosTau2\|chr1 (9590582-9590770)
	291-479, gnl\|canFam2\|chr31 (17626222-17626432)
	291-479, gnl\|dasNov1\|scaffold_239490 (955-748)
	291-479, gnl\|echTel1\|scaffold_316596 (72543-72747)
	291-479, gnl\|fr1\|chrUn (138525807-138525610)
	291-479, gnl\|galGal2\|chr1 (93450957-93451164)
	291-479, gnl\|hg17\|chr21 (18575216-18575426)
	291-479, gnl\|Hg17\|chr21 (18575416-18575228)
	291-479, gnl\|loxAfr1\|scaffold_21536 (11205-10998)
	291-479, gnl\|mm7\|chr16 (78959144-78959351)
	291-479, gnl\|Mm7\|chr16 (78959341-78959153)
	291-479, gnl\|monDom2\|scaffold_29 (5289776-5289987)
	291-479, gnl\|oryCun1\|scaffold_212877 (94333-94125)
	291-479, gnl\|panTro1\|chr22 (18692273-18692483)
	291-479, gnl\|rn3\|chr11 (18029515-18029722)
	291-479, gnl\|tetNig1\|chr7 (10876733-10876934)
	291-479, gnl\|xenTro1\|scaffold_72 (305910-306137)

	714-1223, gnl\|bosTau2\|chr1 (9603204-9603745)
	714-1223, gnl\|Hg17\|chr21 (18564314-18563734)
	714-1223, gnl\|Mm7\|chr16 (78951096-78950548)