Non-Coding RNA Search

Ss1.1-rduo424b_o15.5

Sequence:


               
               TTGCATTGTTCACGATTGAAGCATTAGACTGGTGCTGAGATGGCAGGTGGAACAAGGCCG
GGGGACTTGATCTCCTCGCTGCCAGAGTTCTCCGCTTTCACTGCGCTGCTTACATTGAAC
GGCTTAAGAATAAGCTCCTGTGTGAGCCCTTGGAGGCCAAGGAGTATTGTTGAATTCAGA
AAGGAATCGCTTTCTCTTAGTGATAATTTGAATATTTTGACAATGAAGCTAAGCTACTCC
GCTGCCTGGTTTGCGTACTTCATGTCATGTGCGCCCTTTCGAGTGCAGCAGAAGAGAGAG
CCCCCGCCTCTCTGAATTCATAAATCGGTATTGTCCATCGGTGAGGTGGGTAGGAGCAAA
GAAGAATCATCCAGGAGAATTTTGCTCTCTTGCTTTAATGTTTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATTGTTCACGATTGAAGCATTAGACTGGTGCTGAGATGGCAGGTGGAACAAGGCCG
GGGGACTTGATCTCCTCGCTGCCAGAGTTCTCCGCTTTCACTGCGCTGCTTACATTGAAC
GGCTTAAGAATAAGCTCCTGTGTGAGCCCTTGGAGGCCAAGGAGTATTGTTGAATTCAGA
AAGGAATCGCTTTCTCTTAGTGATAATTTGAATATTTTGACAATGAAGCTAAGCTACTCC
GCTGCCTGGTTTGCGTACTTCATGTCATGTGCGCCCTTTCGAGTGCAGCAGAAGAGAGAG
CCCCCGCCTCTCTGAATTCATAAATCGGTATTGTCCATCGGTGAGGTGGGTAGGAGCAAA
GAAGAATCATCCAGGAGAATTTTGCTCTCTTGCTTTAATGTTTTTTTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-274, - strand, RNAz p=0.955675
               

               
               104-223, + strand, RNAz p=0.810028

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-274, - strand, RNAz p=0.955675
               

               
               104-223, + strand, RNAz p=0.810028

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-408, gnl|bosTau2|chr9 (47762788-47763194)
               

               
               1-408, gnl|canFam2|chr1 (38484876-38486089)
               

               
               1-408, gnl|echTel1|scaffold_282495 (78940-80047)
               

               
               1-408, gnl|hg17|chr6 (144324429-144325515)
               

               
               1-408, gnl|Hg17|chr6 (144324987-144324583)
               

               
               1-408, gnl|loxAfr1|scaffold_998 (93532-92458)
               

               
               1-408, gnl|mm7|chr10 (12816009-12814868)
               

               
               1-408, gnl|Mm7|chr10 (12815453-12815861)
               

               
               1-408, gnl|monDom2|scaffold_0 (63585278-63584084)
               

               
               1-408, gnl|oryCun1|scaffold_57771 (1611-553)
               

               
               1-408, gnl|panTro1|chr5 (147242697-147243783)
               

               
               1-408, gnl|rheMac2|chr4 (119721010-119719921)
               

               
               1-408, gnl|rn3|chr1 (7905915-7904836)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-408, gnl|bosTau2|chr9 (47762788-47763194)
               

               
               1-408, gnl|canFam2|chr1 (38484876-38486089)
               

               
               1-408, gnl|echTel1|scaffold_282495 (78940-80047)
               

               
               1-408, gnl|hg17|chr6 (144324429-144325515)
               

               
               1-408, gnl|Hg17|chr6 (144324987-144324583)
               

               
               1-408, gnl|loxAfr1|scaffold_998 (93532-92458)
               

               
               1-408, gnl|mm7|chr10 (12816009-12814868)
               

               
               1-408, gnl|Mm7|chr10 (12815453-12815861)
               

               
               1-408, gnl|monDom2|scaffold_0 (63585278-63584084)
               

               
               1-408, gnl|oryCun1|scaffold_57771 (1611-553)
               

               
               1-408, gnl|panTro1|chr5 (147242697-147243783)
               

               
               1-408, gnl|rheMac2|chr4 (119721010-119719921)
               

               
               1-408, gnl|rn3|chr1 (7905915-7904836)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               duo (0.345602)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)

	1-274, - strand, RNAz p=0.955675
	104-223, + strand, RNAz p=0.810028

	1-408, gnl\|bosTau2\|chr9 (47762788-47763194)
	1-408, gnl\|canFam2\|chr1 (38484876-38486089)
	1-408, gnl\|echTel1\|scaffold_282495 (78940-80047)
	1-408, gnl\|hg17\|chr6 (144324429-144325515)
	1-408, gnl\|Hg17\|chr6 (144324987-144324583)
	1-408, gnl\|loxAfr1\|scaffold_998 (93532-92458)
	1-408, gnl\|mm7\|chr10 (12816009-12814868)
	1-408, gnl\|Mm7\|chr10 (12815453-12815861)
	1-408, gnl\|monDom2\|scaffold_0 (63585278-63584084)
	1-408, gnl\|oryCun1\|scaffold_57771 (1611-553)
	1-408, gnl\|panTro1\|chr5 (147242697-147243783)
	1-408, gnl\|rheMac2\|chr4 (119721010-119719921)
	1-408, gnl\|rn3\|chr1 (7905915-7904836)