Non-Coding RNA Search

Ss1.1-rduo424b_o3.5

Sequence:


               
               AAACCTGCAACCTCATGGTTCGTAGTCAGATTCATTTCTGCTGCGCCATGATGGGAACTC
CATGGTTTTTTTCTTGTTGTTTTGTTTTTTTAATGAATTACCAGCCTGGAGGGCCTGGTT
TGACTTATTAGAAAGGGAACTGCTAGGTTTCCTAGCACAAGTGGCCAAAGGTGGGGCAGA
TCTGCTTAGCTGAGCTACTAAACCAGACTGTTCTCAGAACTTCTCCCCTTGGGATTTTTT
TGAGGAAGCCATCAGATGTGTGAAAGTGCTTTCAGACCAGCAAGTGGGATTCCCGTGGGA
GGAGCTACCCTGACGACCAGCCGTAACAGGCTCCTTAAGGGGAGCGGCGCTTGCAGAAGG
GACCATAGCAGTCAGCCCTGGTGCAGGCCGCCCAGACCGAGATGCACCTTTTTCAAGGGG
CGCTTGGCTGTGCTGAAGGAGATGGGTAGCTGTTCTCACCCTTCTCTTTGCCTGCAGGTG
GTTCCCGGGCCCTGGTTCATGGGCGGCTGTGGCGTCAGGACGGGGTCCTAGCTGTGTCCT
GTGCCCAGGAGGGCGTGATCCGAGTGAAGCCCAAGGTTTCAAAGAGCAAGCTATAGCCAG
AGGTACCAGCTTGGCCTGGCACTTCAGGGATCTTCCTTCTCTCCCCACTCCTGAGGCAGG
AGTTACTGTCCAGGGCCAGCCCTCTGTCCCTGACATCCAATAAAGACTCATACCACTGGA
AAAAAAAAAAAAAAAAAAAAAAAAGCCAGAACTGCAGCCCTCCCTCCAGCCATCGACTCC
AGCGGACGCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCTGCAACCTCATGGTTCGTAGTCAGATTCATTTCTGCTGCGCCATGATGGGAACTC
CATGGTTTTTTTCTTGTTGTTTTGTTTTTTTAATGAATTACCAGCCTGGAGGGCCTGGTT
TGACTTATTAGAAAGGGAACTGCTAGGTTTCCTAGCACAAGTGGCCAAAGGTGGGGCAGA
TCTGCTTAGCTGAGCTACTAAACCAGACTGTTCTCAGAACTTCTCCCCTTGGGATTTTTT
TGAGGAAGCCATCAGATGTGTGAAAGTGCTTTCAGACCAGCAAGTGGGATTCCCGTGGGA
GGAGCTACCCTGACGACCAGCCGTAACAGGCTCCTTAAGGGGAGCGGCGCTTGCAGAAGG
GACCATAGCAGTCAGCCCTGGTGCAGGCCGCCCAGACCGAGATGCACCTTTTTCAAGGGG
CGCTTGGCTGTGCTGAAGGAGATGGGTAGCTGTTCTCACCCTTCTCTTTGCCTGCAGGTG
GTTCCCGGGCCCTGGTTCATGGGCGGCTGTGGCGTCAGGACGGGGTCCTAGCTGTGTCCT
GTGCCCAGGAGGGCGTGATCCGAGTGAAGCCCAAGGTTTCAAAGAGCAAGCTATAGCCAG
AGGTACCAGCTTGGCCTGGCACTTCAGGGATCTTCCTTCTCTCCCCACTCCTGAGGCAGG
AGTTACTGTCCAGGGCCAGCCCTCTGTCCCTGACATCCAATAAAGACTCATACCACTGGA
AAAAAAAAAAAAAAAAAAAAAAAAGCCAGAACTGCAGCCCTCCCTCCAGCCATCGACTCC
AGCGGACGCGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               564-681, - strand, RNAz p=0.646225

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               564-681, - strand, RNAz p=0.646225

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK095851, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK095851, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-782, gnl|bosTau2|chr13 (54449519-54448802)
               

               
               77-782, gnl|Hg17|chr20 (43904532-43903705)
               

               
               77-782, gnl|Mm7|chr2 (164534031-164533371)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-782, gnl|bosTau2|chr13 (54449519-54448802)
               

               
               77-782, gnl|Hg17|chr20 (43904532-43903705)
               

               
               77-782, gnl|Mm7|chr2 (164534031-164533371)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               duo (0.345602)
               

               
               cbr (0.255951)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               cbr (0.255951)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)

	77-782, gnl\|bosTau2\|chr13 (54449519-54448802)
	77-782, gnl\|Hg17\|chr20 (43904532-43903705)
	77-782, gnl\|Mm7\|chr2 (164534031-164533371)

	duo (0.345602)
	cbr (0.255951)
	cli (0.152812)
	hyp (0.142837)
	lnt (0.142308)