Non-Coding RNA Search

Ss1.1-rduo425b_a9.5

Sequence:


               
               CTTAGAGGCTTTGAGGTCCTTTCATCTCAGCTGATCTCCCCATCACCTTAGGTGGCTTCC
CAGGTATGGGTTCCTTTCTTCGTTCACAGCTCCTTCTTGGGATTGCTAGTCCCATCCTGA
TTCTCTTCTCTCCTTTTTTTCCCTTTTGTTCTACCCAGTTATGTGGAGTGTTTCTTGCCC
TTTTCGGAGGTTTAAGGTCTTCTGCCAGCAGCATTAGTAGATGTTCTGCGTGAATTGTTC
TACAAGTAGAATTTTTTTTAATGTGTTTGTGGGAGAAGAAACATGGAAGAAATGCCCATC
CCTTTTAAAATCCTCAGCTATTTTACATTCCAAAAATATTGTTCTGAAATTCTTGTGGTC
AATGAGTTCTATGGACAGAATTTCACTTGCAGCTCAAATGCTTCTGTGTCAACTAATCCA
ATGTGTGCCTTGAGTCAAGGAATTCAGTTCATTGAGAGAACCTGTCCAGGTGCAACATCC
AGATTCACAACAAACTTTGTGATTTTGTATTCATTTATCCCAACTCTTGTCATCCTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGAGGCTTTGAGGTCCTTTCATCTCAGCTGATCTCCCCATCACCTTAGGTGGCTTCC
CAGGTATGGGTTCCTTTCTTCGTTCACAGCTCCTTCTTGGGATTGCTAGTCCCATCCTGA
TTCTCTTCTCTCCTTTTTTTCCCTTTTGTTCTACCCAGTTATGTGGAGTGTTTCTTGCCC
TTTTCGGAGGTTTAAGGTCTTCTGCCAGCAGCATTAGTAGATGTTCTGCGTGAATTGTTC
TACAAGTAGAATTTTTTTTAATGTGTTTGTGGGAGAAGAAACATGGAAGAAATGCCCATC
CCTTTTAAAATCCTCAGCTATTTTACATTCCAAAAATATTGTTCTGAAATTCTTGTGGTC
AATGAGTTCTATGGACAGAATTTCACTTGCAGCTCAAATGCTTCTGTGTCAACTAATCCA
ATGTGTGCCTTGAGTCAAGGAATTCAGTTCATTGAGAGAACCTGTCCAGGTGCAACATCC
AGATTCACAACAAACTTTGTGATTTTGTATTCATTTATCCCAACTCTTGTCATCCTGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62822154|gb|AAY14703.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822154|gb|AAY14703.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-278, - strand, RNAz p=0.946105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, - strand, RNAz p=0.946105

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               28-279, gnl|bosTau2|chr11 (10219406-10219650)
               


               
               51-278, gnl|bosTau2|chr10 (6262591-6262821)
               


               
               389-540, gnl|bosTau2|chr15 (30816797-30816646)
               

               
               389-540, gnl|canFam2|chr10 (49399800-49399912)
               

               
               389-540, gnl|danRer3|chr13 (6590993-6591087)
               

               
               389-540, gnl|fr1|chrUn (282216247-282216359)
               

               
               389-540, gnl|galGal2|chr3 (21559376-21559488)
               

               
               389-540, gnl|hg17|chr2 (43951946-43952058)
               

               
               389-540, gnl|Hg17|chr2 (43952099-43951948)
               

               
               389-540, gnl|mm7|chr17 (82952975-82953087)
               

               
               389-540, gnl|Mm7|chr17 (82953128-82952977)
               

               
               389-540, gnl|monDom2|scaffold_1 (2437456-2437568)
               

               
               389-540, gnl|panTro1|chr12 (45612495-45612607)
               

               
               389-540, gnl|rheMac2|chr13 (43933660-43933772)
               

               
               389-540, gnl|rn3|chr6 (8028134-8028246)
               

               
               389-540, gnl|tetNig1|chr17 (11048100-11047988)
               

               
               389-540, gnl|xenTro1|scaffold_30 (2339236-2339348)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-279, gnl|bosTau2|chr11 (10219406-10219650)
               


               
               51-278, gnl|bosTau2|chr10 (6262591-6262821)
               


               
               389-540, gnl|bosTau2|chr15 (30816797-30816646)
               

               
               389-540, gnl|canFam2|chr10 (49399800-49399912)
               

               
               389-540, gnl|danRer3|chr13 (6590993-6591087)
               

               
               389-540, gnl|fr1|chrUn (282216247-282216359)
               

               
               389-540, gnl|galGal2|chr3 (21559376-21559488)
               

               
               389-540, gnl|hg17|chr2 (43951946-43952058)
               

               
               389-540, gnl|Hg17|chr2 (43952099-43951948)
               

               
               389-540, gnl|mm7|chr17 (82952975-82953087)
               

               
               389-540, gnl|Mm7|chr17 (82953128-82952977)
               

               
               389-540, gnl|monDom2|scaffold_1 (2437456-2437568)
               

               
               389-540, gnl|panTro1|chr12 (45612495-45612607)
               

               
               389-540, gnl|rheMac2|chr13 (43933660-43933772)
               

               
               389-540, gnl|rn3|chr6 (8028134-8028246)
               

               
               389-540, gnl|tetNig1|chr17 (11048100-11047988)
               

               
               389-540, gnl|xenTro1|scaffold_30 (2339236-2339348)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.345602)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               sin (0.174948)

	28-279, gnl\|bosTau2\|chr11 (10219406-10219650)

	51-278, gnl\|bosTau2\|chr10 (6262591-6262821)

	389-540, gnl\|bosTau2\|chr15 (30816797-30816646)
	389-540, gnl\|canFam2\|chr10 (49399800-49399912)
	389-540, gnl\|danRer3\|chr13 (6590993-6591087)
	389-540, gnl\|fr1\|chrUn (282216247-282216359)
	389-540, gnl\|galGal2\|chr3 (21559376-21559488)
	389-540, gnl\|hg17\|chr2 (43951946-43952058)
	389-540, gnl\|Hg17\|chr2 (43952099-43951948)
	389-540, gnl\|mm7\|chr17 (82952975-82953087)
	389-540, gnl\|Mm7\|chr17 (82953128-82952977)
	389-540, gnl\|monDom2\|scaffold_1 (2437456-2437568)
	389-540, gnl\|panTro1\|chr12 (45612495-45612607)
	389-540, gnl\|rheMac2\|chr13 (43933660-43933772)
	389-540, gnl\|rn3\|chr6 (8028134-8028246)
	389-540, gnl\|tetNig1\|chr17 (11048100-11047988)
	389-540, gnl\|xenTro1\|scaffold_30 (2339236-2339348)