Non-Coding RNA Search

Ss1.1-rduo425b_j4.5

Sequence:


               
               CGCGCTCTACCTGGGCTGGACCGCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTG
CTCCAGCTGCTGCTGCGCTCAGGACGACGACCCAGCAGCCAACGTCCGGGTTCCCTACAA
GGCCCCGATGCCCGCCTCCAGCCTCACTGCCCGCTTGCCCGCCGTAGCCTCGGATGAAGA
CGGCGACAGCAGCTTCGGCAAGTATGGGAAAAACGCTTACGTATAGGAGGCCTGGCCCGT
GGACCACATTCGCTTCCCACTGCTCCCAGTGGAACCCCCGGGCTGCAGGCACGGGTCCCT
ACTCCCTGTAACAAGCTCTGGGCCCAGCCTTGCATCAGGCTCCGCCCCATGCCCTGGAGC
CTCGCCAGCTCTGGCTTCAGGCCCCGCCTCCCCGGTCGGAGCTCCGCCCTGGCCACGCCT
CCGTCGGCTGGCCCTCTGGATCCTCCCTGGTTAAGAACCCGACGACGCCTGAGAACTCCC
TCTGGCCCCTGAGACTGGACCCATCGTAACCTTCTGAGTCTGGGCTCTGGGCGATGACGG
GGGCTGGAGATGTCCCCGAGTGTTTGTAGTCGGTATAGACATTCATAAATAAATTTGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCTCTACCTGGGCTGGACCGCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTG
CTCCAGCTGCTGCTGCGCTCAGGACGACGACCCAGCAGCCAACGTCCGGGTTCCCTACAA
GGCCCCGATGCCCGCCTCCAGCCTCACTGCCCGCTTGCCCGCCGTAGCCTCGGATGAAGA
CGGCGACAGCAGCTTCGGCAAGTATGGGAAAAACGCTTACGTATAGGAGGCCTGGCCCGT
GGACCACATTCGCTTCCCACTGCTCCCAGTGGAACCCCCGGGCTGCAGGCACGGGTCCCT
ACTCCCTGTAACAAGCTCTGGGCCCAGCCTTGCATCAGGCTCCGCCCCATGCCCTGGAGC
CTCGCCAGCTCTGGCTTCAGGCCCCGCCTCCCCGGTCGGAGCTCCGCCCTGGCCACGCCT
CCGTCGGCTGGCCCTCTGGATCCTCCCTGGTTAAGAACCCGACGACGCCTGAGAACTCCC
TCTGGCCCCTGAGACTGGACCCATCGTAACCTTCTGAGTCTGGGCTCTGGGCGATGACGG
GGGCTGGAGATGTCCCCGAGTGTTTGTAGTCGGTATAGACATTCATAAATAAATTTGTAT

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               98-598, gnl|bosTau2|chr25 (30498120-30497605)
               

               
               98-598, gnl|canFam2|chr6 (11657516-11657137)
               

               
               98-598, gnl|echTel1|scaffold_121097 (438-155)
               

               
               98-598, gnl|hg17|chr7 (100468769-100469123)
               

               
               98-598, gnl|mm7|chr5 (135946160-135945832)
               

               
               98-598, gnl|monDom2|scaffold_66 (3194002-3194394)
               

               
               98-598, gnl|rheMac2|chr3 (48522782-48523140)
               

               
               98-598, gnl|rn3|chr12 (20834146-20833800)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-598, gnl|bosTau2|chr25 (30498120-30497605)
               

               
               98-598, gnl|canFam2|chr6 (11657516-11657137)
               

               
               98-598, gnl|echTel1|scaffold_121097 (438-155)
               

               
               98-598, gnl|hg17|chr7 (100468769-100469123)
               

               
               98-598, gnl|mm7|chr5 (135946160-135945832)
               

               
               98-598, gnl|monDom2|scaffold_66 (3194002-3194394)
               

               
               98-598, gnl|rheMac2|chr3 (48522782-48523140)
               

               
               98-598, gnl|rn3|chr12 (20834146-20833800)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               eje (0.0988338)

	98-598, gnl\|bosTau2\|chr25 (30498120-30497605)
	98-598, gnl\|canFam2\|chr6 (11657516-11657137)
	98-598, gnl\|echTel1\|scaffold_121097 (438-155)
	98-598, gnl\|hg17\|chr7 (100468769-100469123)
	98-598, gnl\|mm7\|chr5 (135946160-135945832)
	98-598, gnl\|monDom2\|scaffold_66 (3194002-3194394)
	98-598, gnl\|rheMac2\|chr3 (48522782-48523140)
	98-598, gnl\|rn3\|chr12 (20834146-20833800)