Non-Coding RNA Search

Ss1.1-rduo428b_e16.5

Sequence:


               
               CAGTGCCCAAGGCAGCGAGGAGCGTGGCACCGGGATGCTGCGGGCTGGAGGACCTACTGG
GGACTTACCCCGGGCCGGAGAAGTCCACACTGGGACAACCATCATGGCGGTGGAGTTTGA
TGGGGGCGTCGTGGTGGGATCTGATTCCCGGGTGTCTGCAGGAGAGGCGGTGGTAAACCG
AGTGTTTGACAAGCTGTCCCCCCTGCATCATCGAATCTACTGTGCGCTCTCTGGCTCAGC
CGCTGATGCTCAGGCCATAGCGGACATGGCCGCCTACCAGCTGGAGCTCCATGGAATGGA
ACTGGAAGAACCTCCACTTGTTCTGGCTGCTGCAAACGTGGTGAGGAACATCAGCTATAA
ATATCGGGAGGACCTATCTGCACATCTCATGGTAGCCGGCTGGGACCAACGTGAAGGGGG
CCAGGTATATGGAACCATGGGAGGAATGCTGATTCGACAGCCCTTTGCCATCGGTGGCTC
TGGCAGCACCTACATCTACGGTTATGTGGACGCGGCGTATAAGCCAGGCATGTCCCCTGA
GGAGTGCAGGCGCTTCACCACAAATGCTATTGCTCTGGCCATGAACCGGGATGGCTCTAG
CGGGGGTGTCATCTATCTGGTCACCATTACAGCTGCTGGTGTGGACCATCGAGTAATCTT
GGGCAATGAGCTGCCAAAATTCTATGACGAGTGACTCTTCCTCAGACCTCCCTGCTGTAT
TTTGTAATAAACGTTCTGGGCCCGGAACCTGGTATGGTCAGTGGGTGCTCGGCGAGATGA
AGCTTGGGAAGGGAGCTTCTTCCCTCACAGATGGTAGCTTATCCTTTTTATTCTTTTGTG
CCCAGCTTGCAAACATCTTTCCCAGAGGAAAGTGCATCGGGAGGATGCTGGAACTAGGAA
GAACCCTATACGTGACAGGCCATCATGTTTTGAGTGATTTTGAAATATTAAAAATGATAT
AAAGTCTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGCCCAAGGCAGCGAGGAGCGTGGCACCGGGATGCTGCGGGCTGGAGGACCTACTGG
GGACTTACCCCGGGCCGGAGAAGTCCACACTGGGACAACCATCATGGCGGTGGAGTTTGA
TGGGGGCGTCGTGGTGGGATCTGATTCCCGGGTGTCTGCAGGAGAGGCGGTGGTAAACCG
AGTGTTTGACAAGCTGTCCCCCCTGCATCATCGAATCTACTGTGCGCTCTCTGGCTCAGC
CGCTGATGCTCAGGCCATAGCGGACATGGCCGCCTACCAGCTGGAGCTCCATGGAATGGA
ACTGGAAGAACCTCCACTTGTTCTGGCTGCTGCAAACGTGGTGAGGAACATCAGCTATAA
ATATCGGGAGGACCTATCTGCACATCTCATGGTAGCCGGCTGGGACCAACGTGAAGGGGG
CCAGGTATATGGAACCATGGGAGGAATGCTGATTCGACAGCCCTTTGCCATCGGTGGCTC
TGGCAGCACCTACATCTACGGTTATGTGGACGCGGCGTATAAGCCAGGCATGTCCCCTGA
GGAGTGCAGGCGCTTCACCACAAATGCTATTGCTCTGGCCATGAACCGGGATGGCTCTAG
CGGGGGTGTCATCTATCTGGTCACCATTACAGCTGCTGGTGTGGACCATCGAGTAATCTT
GGGCAATGAGCTGCCAAAATTCTATGACGAGTGACTCTTCCTCAGACCTCCCTGCTGTAT
TTTGTAATAAACGTTCTGGGCCCGGAACCTGGTATGGTCAGTGGGTGCTCGGCGAGATGA
AGCTTGGGAAGGGAGCTTCTTCCCTCACAGATGGTAGCTTATCCTTTTTATTCTTTTGTG
CCCAGCTTGCAAACATCTTTCCCAGAGGAAAGTGCATCGGGAGGATGCTGGAACTAGGAA
GAACCCTATACGTGACAGGCCATCATGTTTTGAGTGATTTTGAAATATTAAAAATGATAT
AAAGTCTCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5JNW4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JNW4_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               80-645, gnl|bosTau2|chr13 (47256513-47257076)
               

               
               80-645, gnl|Hg17|chr17 (4646535-4648611)
               

               
               80-645, gnl|Mm7|chr1 (101267808-101268364)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-645, gnl|bosTau2|chr13 (47256513-47257076)
               

               
               80-645, gnl|Hg17|chr17 (4646535-4648611)
               

               
               80-645, gnl|Mm7|chr1 (101267808-101268364)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cje (0.826173)
               

               
               ill (0.702371)
               

               
               duo (0.691204)
               

               
               col (0.585023)
               

               
               jej (0.494609)
               

               
               csp (0.483559)
               

               
               cty (0.31224)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               thg (0.253582)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cbl (0.114797)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.826173)
               

               
               ill (0.702371)
               

               
               duo (0.691204)
               

               
               col (0.585023)
               

               
               jej (0.494609)
               

               
               csp (0.483559)
               

               
               cty (0.31224)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               thg (0.253582)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cbl (0.114797)

	80-645, gnl\|bosTau2\|chr13 (47256513-47257076)
	80-645, gnl\|Hg17\|chr17 (4646535-4648611)
	80-645, gnl\|Mm7\|chr1 (101267808-101268364)

	cje (0.826173)
	ill (0.702371)
	duo (0.691204)
	col (0.585023)
	jej (0.494609)
	csp (0.483559)
	cty (0.31224)
	cst (0.280073)
	cga (0.279096)
	thg (0.253582)
	mas (0.210305)
	hea (0.204499)
	eje (0.197668)
	nlu (0.191681)
	sin (0.174948)
	nco (0.161734)
	eli (0.151814)
	cag (0.151194)
	lin (0.145603)
	lnt (0.142308)
	cbl (0.114797)