Non-Coding RNA Search

Ss1.1-rduo430b_a5.5

Sequence:


               
               GGGCACGTCCTGCCCTTTGCGTCCTGGTACTTCTGCGAACTTGTGGGCGTCCTGCTCCTC
CAAAAAGCTCTGGGGCCTAGGAGCTGGCGAACAGACCACAATGAGCTGTATGACAAAGAA
TCTGCAGGAGGTCCTCAAGCTCCTAGGCAAGAGTTCGTGTTTTGACAGAATTTTGGAAAA
GATGACTGTTGTCTCTGCTGTCCCTGGGAAAGTGATCTGTGAAATGAAAGTAGAGGAAGA
GCATACCAATAAAATGGGCACTCTCCATGGTGGCATGACAGCCACCTTAGTGGATTGTGT
ATCCACATATGCTCTGCTATGCACAGAAAGGGGAGCACCTGGAGTTAGTGTGGACATGAA
CATAACGTACATGTCACCTGCTAAAATGGGAGAAGATATACTGATTACAGCGCATATTCT
GAAACAAGGAAAAACACTTGCATTTGCCTCTGTGGATCTGACAAACAAGGTCACGGGGAA
ATTAATAGCACAAGGCAGACACACAAAACACCTGGGAACAGCCTAAAGAAACCCAACAAT
GAATGTCCAGAGTAAATATGACTTGAATACAATTTTCAAAATAAATTAGCACAATCAAAA
AAAAAAAAAAAATTATTTGGGGAAAAATGTCATAGAAGTCAAGTGGAACATAGGAGAGGG
TTGTCTGTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACGTCCTGCCCTTTGCGTCCTGGTACTTCTGCGAACTTGTGGGCGTCCTGCTCCTC
CAAAAAGCTCTGGGGCCTAGGAGCTGGCGAACAGACCACAATGAGCTGTATGACAAAGAA
TCTGCAGGAGGTCCTCAAGCTCCTAGGCAAGAGTTCGTGTTTTGACAGAATTTTGGAAAA
GATGACTGTTGTCTCTGCTGTCCCTGGGAAAGTGATCTGTGAAATGAAAGTAGAGGAAGA
GCATACCAATAAAATGGGCACTCTCCATGGTGGCATGACAGCCACCTTAGTGGATTGTGT
ATCCACATATGCTCTGCTATGCACAGAAAGGGGAGCACCTGGAGTTAGTGTGGACATGAA
CATAACGTACATGTCACCTGCTAAAATGGGAGAAGATATACTGATTACAGCGCATATTCT
GAAACAAGGAAAAACACTTGCATTTGCCTCTGTGGATCTGACAAACAAGGTCACGGGGAA
ATTAATAGCACAAGGCAGACACACAAAACACCTGGGAACAGCCTAAAGAAACCCAACAAT
GAATGTCCAGAGTAAATATGACTTGAATACAATTTTCAAAATAAATTAGCACAATCAAAA
AAAAAAAAAAAATTATTTGGGGAAAAATGTCATAGAAGTCAAGTGGAACATAGGAGAGGG
TTGTCTGTATTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47222274|emb|CAG11153.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47222274|emb|CAG11153.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               251-370, + strand, RNAz p=0.993307
               

               
               253-370, + strand, RNAz p=0.534117

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-370, + strand, RNAz p=0.993307
               

               
               253-370, + strand, RNAz p=0.534117

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               180-370, gnl|bosTau2|chr23 (26560831-26561021)
               

               
               180-370, gnl|canFam2|chr35 (25736420-25736550)
               

               
               180-370, gnl|echTel1|scaffold_10849 (2630-2758)
               

               
               180-370, gnl|Hg17|chr6 (24806088-24806278)
               

               
               180-370, gnl|hg17|chr7 (147784367-147784494)
               

               
               180-370, gnl|loxAfr1|scaffold_20555 (13793-13919)
               

               
               180-370, gnl|mm7|chr13 (24186704-24186574)
               

               
               180-370, gnl|Mm7|chr13 (24186703-24186513)
               

               
               180-370, gnl|oryCun1|scaffold_153940 (463-333)
               

               
               180-370, gnl|panTro1|chr6 (150638424-150638551)
               

               
               180-370, gnl|rheMac2|chr3 (185962180-185962307)
               

               
               180-370, gnl|rn3|chr17 (47314704-47314834)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-370, gnl|bosTau2|chr23 (26560831-26561021)
               

               
               180-370, gnl|canFam2|chr35 (25736420-25736550)
               

               
               180-370, gnl|echTel1|scaffold_10849 (2630-2758)
               

               
               180-370, gnl|Hg17|chr6 (24806088-24806278)
               

               
               180-370, gnl|hg17|chr7 (147784367-147784494)
               

               
               180-370, gnl|loxAfr1|scaffold_20555 (13793-13919)
               

               
               180-370, gnl|mm7|chr13 (24186704-24186574)
               

               
               180-370, gnl|Mm7|chr13 (24186703-24186513)
               

               
               180-370, gnl|oryCun1|scaffold_153940 (463-333)
               

               
               180-370, gnl|panTro1|chr6 (150638424-150638551)
               

               
               180-370, gnl|rheMac2|chr3 (185962180-185962307)
               

               
               180-370, gnl|rn3|chr17 (47314704-47314834)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               hea (0.613497)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.613497)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	251-370, + strand, RNAz p=0.993307
	253-370, + strand, RNAz p=0.534117

	180-370, gnl\|bosTau2\|chr23 (26560831-26561021)
	180-370, gnl\|canFam2\|chr35 (25736420-25736550)
	180-370, gnl\|echTel1\|scaffold_10849 (2630-2758)
	180-370, gnl\|Hg17\|chr6 (24806088-24806278)
	180-370, gnl\|hg17\|chr7 (147784367-147784494)
	180-370, gnl\|loxAfr1\|scaffold_20555 (13793-13919)
	180-370, gnl\|mm7\|chr13 (24186704-24186574)
	180-370, gnl\|Mm7\|chr13 (24186703-24186513)
	180-370, gnl\|oryCun1\|scaffold_153940 (463-333)
	180-370, gnl\|panTro1\|chr6 (150638424-150638551)
	180-370, gnl\|rheMac2\|chr3 (185962180-185962307)
	180-370, gnl\|rn3\|chr17 (47314704-47314834)

	hea (0.613497)
	duo (0.345602)
	sme (0.305437)
	hlv (0.278513)
	ssp (0.271039)
	eru (0.240096)
	mas (0.210305)
	fcc (0.197785)
	nep (0.183925)
	ill (0.175593)
	nje (0.16592)
	cli (0.152812)
	isp (0.150376)
	spl (0.143184)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	pgl (0.118483)
	spc (0.113366)
	jej (0.0989218)