Non-Coding RNA Search

Ss1.1-rduo430b_f24.5

Sequence:


               
               GCTCACTCAAGGCCTACAACTACCACATCCAAGAGCTGCAGCAAGAGATGGAAGAGGCCA
CAGCCAGTGCCCAGCGCATCCGGCGAGATCTGCAGGAGCTGCGGGGCCGCTACGGCACTG
TGGAACCCCAGGACAAATGTGCCACCTGCGACTTCCCCTTGCTTAACCGCCCTTTTTACC
TCTTCCTCTGTGGCCACATGTTCCACGCTGACTGCCTTCTGCAGGCCGTGCGGCCTGGCC
TGCCAGCCTACAAGCAGGCCCGGCTAGAGGAGCTGCAGCGGAAGCTGGGGGCTGTTCCAC
CCCCCTCCAAGGGCTCTGCCCGGGCTAAGGAGGCTGAGGCAGGGGCGGCTGCCTCCGGCC
CCAGCCGGGAACAGCTCAAGGCCGACCTGGACGAACTGGTGGCTGCTGAGTGTGTGTACT
GTGGGGAGCTGATGATCCGCTCTATTGACCGGCCCTTTATTGACCCCCAGTGCTATGAGG
AGGAGCACCTCAGTTGGTTGTAGGCAGGCATCAGGCGGGCCAGCCATCGTGGGCTGTTCC
TTCTTGGGAGGGCCACAGCGTCTGTGCTTGGTCTCCTGGAGACTGCTGGGCAGGGACTAT
GGTGGTGGGAGTAGATCACAGCTGTTGCCCTCAAGGTGTCAGCTCTGAGTGCATTCTGCC
AACTGCCCATGCTCTTCCTCACGGCTGCCTTAGAGCTGATGTTTTGCCATGCTGTCAGCC
TGCTTCCTAATAGAGAGCCTTAGCTTGGAGAAGTCAGAATTCTGATGCATTACCATCCCC
CTGCATCTAACAGCTCTTTTTTCCCTTTTACTCCCTGCATATATCCTGTTCACCTTCTGT
AACACTAACTACTGTTCTTCCTTTTCACTCTGTGGCTCTTCTTCCTCAGAAAATCCCTCT
CTACTGTCTGCCCCTAGGTCCCTCTAAGTCCTGGGCATTGGGTGGGGGGAAGGTGGCACT
GCTGGTGAGAGTGCTCTTGTGCATACCATCTGGGGCTCCAGTGTGAAGGGTGCTCTGGGG
TAGAGGGCCTCACAGAAGACAGTATAAGATGGTGATGGGGATGGAGAGCATTAAACTGTC
TGCACTGCAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTGTCTCTTCTCCTCGTGCCGA
ATTCGGCACGAGGTTGGAGTCTGCTTTCTTTTGAAGCTAGAAGCAGCCTTGAGGAGGTGC
AGCTGGCCACCACCTGTGCAGAAACCCTGGCACTCCTCTCAGCTCCTTAAGGCCTTGGGC
CCAAGCAGCTCTAACTTCCCTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCACTCAAGGCCTACAACTACCACATCCAAGAGCTGCAGCAAGAGATGGAAGAGGCCA
CAGCCAGTGCCCAGCGCATCCGGCGAGATCTGCAGGAGCTGCGGGGCCGCTACGGCACTG
TGGAACCCCAGGACAAATGTGCCACCTGCGACTTCCCCTTGCTTAACCGCCCTTTTTACC
TCTTCCTCTGTGGCCACATGTTCCACGCTGACTGCCTTCTGCAGGCCGTGCGGCCTGGCC
TGCCAGCCTACAAGCAGGCCCGGCTAGAGGAGCTGCAGCGGAAGCTGGGGGCTGTTCCAC
CCCCCTCCAAGGGCTCTGCCCGGGCTAAGGAGGCTGAGGCAGGGGCGGCTGCCTCCGGCC
CCAGCCGGGAACAGCTCAAGGCCGACCTGGACGAACTGGTGGCTGCTGAGTGTGTGTACT
GTGGGGAGCTGATGATCCGCTCTATTGACCGGCCCTTTATTGACCCCCAGTGCTATGAGG
AGGAGCACCTCAGTTGGTTGTAGGCAGGCATCAGGCGGGCCAGCCATCGTGGGCTGTTCC
TTCTTGGGAGGGCCACAGCGTCTGTGCTTGGTCTCCTGGAGACTGCTGGGCAGGGACTAT
GGTGGTGGGAGTAGATCACAGCTGTTGCCCTCAAGGTGTCAGCTCTGAGTGCATTCTGCC
AACTGCCCATGCTCTTCCTCACGGCTGCCTTAGAGCTGATGTTTTGCCATGCTGTCAGCC
TGCTTCCTAATAGAGAGCCTTAGCTTGGAGAAGTCAGAATTCTGATGCATTACCATCCCC
CTGCATCTAACAGCTCTTTTTTCCCTTTTACTCCCTGCATATATCCTGTTCACCTTCTGT
AACACTAACTACTGTTCTTCCTTTTCACTCTGTGGCTCTTCTTCCTCAGAAAATCCCTCT
CTACTGTCTGCCCCTAGGTCCCTCTAAGTCCTGGGCATTGGGTGGGGGGAAGGTGGCACT
GCTGGTGAGAGTGCTCTTGTGCATACCATCTGGGGCTCCAGTGTGAAGGGTGCTCTGGGG
TAGAGGGCCTCACAGAAGACAGTATAAGATGGTGATGGGGATGGAGAGCATTAAACTGTC
TGCACTGCAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTGTCTCTTCTCCTCGTGCCGA
ATTCGGCACGAGGTTGGAGTCTGCTTTCTTTTGAAGCTAGAAGCAGCCTTGAGGAGGTGC
AGCTGGCCACCACCTGTGCAGAAACCCTGGCACTCCTCTCAGCTCCTTAAGGCCTTGGGC
CCAAGCAGCTCTAACTTCCCTAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               160-319, - strand, RNAz p=0.840387
               

               
               970-1088, - strand, RNAz p=0.885319

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-319, - strand, RNAz p=0.840387
               

               
               970-1088, - strand, RNAz p=0.885319

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               236-399, - strand, RNAmicro p=0.966717

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               236-399, - strand, RNAmicro p=0.966717

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1088, gnl|bosTau2|chr10 (25718034-25719148)
               

               
               1-1088, gnl|Hg17|chr15 (38982329-38983464)
               

               
               1-1088, gnl|Mm7|chr2 (119037966-119038987)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1088, gnl|bosTau2|chr10 (25718034-25719148)
               

               
               1-1088, gnl|Hg17|chr15 (38982329-38983464)
               

               
               1-1088, gnl|Mm7|chr2 (119037966-119038987)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               eje (0.0988338)

	160-319, - strand, RNAz p=0.840387
	970-1088, - strand, RNAz p=0.885319

	1-1088, gnl\|bosTau2\|chr10 (25718034-25719148)
	1-1088, gnl\|Hg17\|chr15 (38982329-38983464)
	1-1088, gnl\|Mm7\|chr2 (119037966-119038987)

	nlu (0.191681)
	duo (0.172801)
	eye (0.170503)
	csp (0.161186)
	eje (0.0988338)