Non-Coding RNA Search

Ss1.1-rduo433b_m6.5

Sequence:


               
               GTCTGCTGTGGATCTGGGAGGAACTGGGGAACCTCCGCCGAGTGGATGCACAGCTGCTGG
GCCAACTGTGCAGCCTGGGACTGGAGATGGGAGTGCTTCGGGAGGAACTGGGTGCCCTCC
TGGAAGAGGAGGCAGAGGAGAGCAGCGAGGAAGAGGACAGAGAGCTGGAGAGGAAGCAAG
AAGGGGCCTCCAGTCCAGTCCCAGGTCACCGCCTTCCTGACTTTGAGATGACTATCTGAA
GCCCTGCCCTGTGCTTCAGATGGACACAGGAATGATATGCAAATTAATGCAAAGAAGATA
GGGGATCTGCAGGTCAAATCAACCTGCAGATGTCGATTCGGAATCAGCATGTGTTCCTTG
AGCCAGTGATTTCTCTGAGGTTGTCTGAGATGAAATTGAGGGGTTGGCCCCAGAGCTGTG
GGGCCTTTTGCAGATGAAACTCTGGATGTATTTGCAGATGTGTTGTAGATGCGTTGCAGG
GGAGACATGGATCTTTGCAAATATGATGGAGATACGTGCACTTGAAAAGTGGCTAGCCCA
AATTGAGATAGGCTGTGTGGCATACACACTGAACTTCAAAACTGGGTATAATAAAAAGAG
TATACAACAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGCTGTGGATCTGGGAGGAACTGGGGAACCTCCGCCGAGTGGATGCACAGCTGCTGG
GCCAACTGTGCAGCCTGGGACTGGAGATGGGAGTGCTTCGGGAGGAACTGGGTGCCCTCC
TGGAAGAGGAGGCAGAGGAGAGCAGCGAGGAAGAGGACAGAGAGCTGGAGAGGAAGCAAG
AAGGGGCCTCCAGTCCAGTCCCAGGTCACCGCCTTCCTGACTTTGAGATGACTATCTGAA
GCCCTGCCCTGTGCTTCAGATGGACACAGGAATGATATGCAAATTAATGCAAAGAAGATA
GGGGATCTGCAGGTCAAATCAACCTGCAGATGTCGATTCGGAATCAGCATGTGTTCCTTG
AGCCAGTGATTTCTCTGAGGTTGTCTGAGATGAAATTGAGGGGTTGGCCCCAGAGCTGTG
GGGCCTTTTGCAGATGAAACTCTGGATGTATTTGCAGATGTGTTGTAGATGCGTTGCAGG
GGAGACATGGATCTTTGCAAATATGATGGAGATACGTGCACTTGAAAAGTGGCTAGCCCA
AATTGAGATAGGCTGTGTGGCATACACACTGAACTTCAAAACTGGGTATAATAAAAAGAG
TATACAACAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               26-144, - strand, RNAz p=0.56598
               

               
               251-481, + strand, RNAz p=0.989477

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-144, - strand, RNAz p=0.56598
               

               
               251-481, + strand, RNAz p=0.989477

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               136-265, - strand, RNAmicro p=0.994

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               136-265, - strand, RNAmicro p=0.994

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               26-606, gnl|bosTau2|chr18 (42262635-42263228)
               

               
               26-606, gnl|Hg17|chr19 (46641750-46642428)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-606, gnl|bosTau2|chr18 (42262635-42263228)
               

               
               26-606, gnl|Hg17|chr19 (46641750-46642428)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               eje (0.0988338)

	26-144, - strand, RNAz p=0.56598
	251-481, + strand, RNAz p=0.989477

	26-606, gnl\|bosTau2\|chr18 (42262635-42263228)
	26-606, gnl\|Hg17\|chr19 (46641750-46642428)