Non-Coding RNA Search

Ss1.1-rduo434b_a24.5

Sequence:


               
               GGGGGCAACGGGGACAACCACAATTTCCACACCGCCAACCAGCGCCTGCAGTGCTTTGGC
GACGTCATCATTCCGAACCCCCTGGACACCTTCGGCAACGTGCAGATGCCCAGTTCCACC
GACCAGACGGAAGCGCTGCCCCTGGTGGTCCGCAAAAACTCCTCTGACCAGTCGGCCTCC
GGCCCCCCCGCCGGCGGCCACCACCAGCCCCTGCACCAGTCGCCTCTGTCGGCCACCGCG
GGCTTCACCACGTCCACCTTCCGCCACCCCTTCCCCCTCCCCCTGATGGCCTACCCGTTT
CAGAGTCCGTTAGGTGCTCCCTCCGGCTCCTTCTCGGGAAAAGACAGAGCCTCTCCTGAA
TCCCTAGACTTAACCAGGGAGACCACGAGTCTGAGGACCAAGATGTCATCCCACCACCTG
AGCCACCACCCTTGTTCACCAGCACATCCACCCAGCGCCGCAGAAGGGCTCTCCTTGTCG
CTCATCAAATCCGAGTGTGGAGAGCTTCAAGACATGTCCGAAATCTCACCTTACTCGGGA
AGTGCAATGCAGGAAGGATTGTCACCCAATCACTTGAAAAAAGCAAAGCTCATGTTCTTT
TATACCCGTTATCCCAGCTCCAATATGCTGAAGACCTACTTCTCTGATGTGAAGTTCAAC
AGATGCATTACCTCTCAGCTCATCAAGTGGTTTAGCAATTTCCGTGAGTTTTACTACATT
CAGATGGAGAAGTACGCGCGTCAAGCCATCAACGATGGAGTCACCAGTACTGAAGAGCTG
TCTATAACCAGAGACTGTGAGCTGTACAGGGCTCTGAACATGCACTACAATAAAGCAAAT
GACTTTGAGGTTCCAGAGAGATTCCTGGAAGTTGCGCAGATCACATTACGGGAGTTTTTC
AATGCCATTATCGCAGGCAAAGATGTTGATCCTTCCTGGAAGAAGCCATATACAAGGTCA
TCTGCAAGCTGGATAGTGAAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGCAACGGGGACAACCACAATTTCCACACCGCCAACCAGCGCCTGCAGTGCTTTGGC
GACGTCATCATTCCGAACCCCCTGGACACCTTCGGCAACGTGCAGATGCCCAGTTCCACC
GACCAGACGGAAGCGCTGCCCCTGGTGGTCCGCAAAAACTCCTCTGACCAGTCGGCCTCC
GGCCCCCCCGCCGGCGGCCACCACCAGCCCCTGCACCAGTCGCCTCTGTCGGCCACCGCG
GGCTTCACCACGTCCACCTTCCGCCACCCCTTCCCCCTCCCCCTGATGGCCTACCCGTTT
CAGAGTCCGTTAGGTGCTCCCTCCGGCTCCTTCTCGGGAAAAGACAGAGCCTCTCCTGAA
TCCCTAGACTTAACCAGGGAGACCACGAGTCTGAGGACCAAGATGTCATCCCACCACCTG
AGCCACCACCCTTGTTCACCAGCACATCCACCCAGCGCCGCAGAAGGGCTCTCCTTGTCG
CTCATCAAATCCGAGTGTGGAGAGCTTCAAGACATGTCCGAAATCTCACCTTACTCGGGA
AGTGCAATGCAGGAAGGATTGTCACCCAATCACTTGAAAAAAGCAAAGCTCATGTTCTTT
TATACCCGTTATCCCAGCTCCAATATGCTGAAGACCTACTTCTCTGATGTGAAGTTCAAC
AGATGCATTACCTCTCAGCTCATCAAGTGGTTTAGCAATTTCCGTGAGTTTTACTACATT
CAGATGGAGAAGTACGCGCGTCAAGCCATCAACGATGGAGTCACCAGTACTGAAGAGCTG
TCTATAACCAGAGACTGTGAGCTGTACAGGGCTCTGAACATGCACTACAATAAAGCAAAT
GACTTTGAGGTTCCAGAGAGATTCCTGGAAGTTGCGCAGATCACATTACGGGAGTTTTTC
AATGCCATTATCGCAGGCAAAGATGTTGATCCTTCCTGGAAGAAGCCATATACAAGGTCA
TCTGCAAGCTGGATAGTGAAGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3372869|gb|AAC28353.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3372869|gb|AAC28353.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-444, - strand, RNAz p=0.901848

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-444, - strand, RNAz p=0.901848

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               6-548, gnl|bosTau2|chr16 (51844079-51843537)
               

               
               6-548, gnl|Hg17|chr1 (210559458-210560000)
               

               
               6-548, gnl|Mm7|chr1 (189693374-189692832)
               


               
               653-851, gnl|bosTau2|chr10 (56464265-56464067)
               

               
               653-851, gnl|canFam2|chr8 (51018210-51018351)
               

               
               653-851, gnl|danRer3|chr17 (49436812-49436688)
               

               
               653-851, gnl|dasNov1|scaffold_33438 (12181-12322)
               

               
               653-851, gnl|echTel1|scaffold_110658 (438-579)
               

               
               653-851, gnl|fr1|chrUn (63253229-63253354)
               

               
               653-851, gnl|hg17|chr14 (74393238-74393379)
               

               
               653-851, gnl|Hg17|chr14 (74393453-74393255)
               

               
               653-851, gnl|loxAfr1|scaffold_1664 (52147-52289)
               

               
               653-851, gnl|mm7|chr12 (83087731-83087870)
               

               
               653-851, gnl|Mm7|chr12 (83087944-83087746)
               

               
               653-851, gnl|monDom2|scaffold_8 (59715408-59715267)
               

               
               653-851, gnl|oryCun1|scaffold_180921 (8573-8432)
               

               
               653-851, gnl|panTro1|chr15 (74396043-74396184)
               

               
               653-851, gnl|rheMac2|chr7 (137968559-137968700)
               

               
               653-851, gnl|rn3|chr6 (109136294-109136433)
               

               
               653-851, gnl|tetNig1|chr10 (4598816-4598690)
               

               
               653-851, gnl|xenTro1|scaffold_68 (598586-598727)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-548, gnl|bosTau2|chr16 (51844079-51843537)
               

               
               6-548, gnl|Hg17|chr1 (210559458-210560000)
               

               
               6-548, gnl|Mm7|chr1 (189693374-189692832)
               


               
               653-851, gnl|bosTau2|chr10 (56464265-56464067)
               

               
               653-851, gnl|canFam2|chr8 (51018210-51018351)
               

               
               653-851, gnl|danRer3|chr17 (49436812-49436688)
               

               
               653-851, gnl|dasNov1|scaffold_33438 (12181-12322)
               

               
               653-851, gnl|echTel1|scaffold_110658 (438-579)
               

               
               653-851, gnl|fr1|chrUn (63253229-63253354)
               

               
               653-851, gnl|hg17|chr14 (74393238-74393379)
               

               
               653-851, gnl|Hg17|chr14 (74393453-74393255)
               

               
               653-851, gnl|loxAfr1|scaffold_1664 (52147-52289)
               

               
               653-851, gnl|mm7|chr12 (83087731-83087870)
               

               
               653-851, gnl|Mm7|chr12 (83087944-83087746)
               

               
               653-851, gnl|monDom2|scaffold_8 (59715408-59715267)
               

               
               653-851, gnl|oryCun1|scaffold_180921 (8573-8432)
               

               
               653-851, gnl|panTro1|chr15 (74396043-74396184)
               

               
               653-851, gnl|rheMac2|chr7 (137968559-137968700)
               

               
               653-851, gnl|rn3|chr6 (109136294-109136433)
               

               
               653-851, gnl|tetNig1|chr10 (4598816-4598690)
               

               
               653-851, gnl|xenTro1|scaffold_68 (598586-598727)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	6-548, gnl\|bosTau2\|chr16 (51844079-51843537)
	6-548, gnl\|Hg17\|chr1 (210559458-210560000)
	6-548, gnl\|Mm7\|chr1 (189693374-189692832)

	653-851, gnl\|bosTau2\|chr10 (56464265-56464067)
	653-851, gnl\|canFam2\|chr8 (51018210-51018351)
	653-851, gnl\|danRer3\|chr17 (49436812-49436688)
	653-851, gnl\|dasNov1\|scaffold_33438 (12181-12322)
	653-851, gnl\|echTel1\|scaffold_110658 (438-579)
	653-851, gnl\|fr1\|chrUn (63253229-63253354)
	653-851, gnl\|hg17\|chr14 (74393238-74393379)
	653-851, gnl\|Hg17\|chr14 (74393453-74393255)
	653-851, gnl\|loxAfr1\|scaffold_1664 (52147-52289)
	653-851, gnl\|mm7\|chr12 (83087731-83087870)
	653-851, gnl\|Mm7\|chr12 (83087944-83087746)
	653-851, gnl\|monDom2\|scaffold_8 (59715408-59715267)
	653-851, gnl\|oryCun1\|scaffold_180921 (8573-8432)
	653-851, gnl\|panTro1\|chr15 (74396043-74396184)
	653-851, gnl\|rheMac2\|chr7 (137968559-137968700)
	653-851, gnl\|rn3\|chr6 (109136294-109136433)
	653-851, gnl\|tetNig1\|chr10 (4598816-4598690)
	653-851, gnl\|xenTro1\|scaffold_68 (598586-598727)