Ss1.1-rduo434b_b14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTGGGGTCACAACTTTTGGAGAGACAAGTTTAAGAAGTTTGATGACAAATACCTGCGG AAGCTTTTGATTCGGGAGAACCAACCCAAGTCTAGCATTGTGTCCTTATATAAAAAGCTC GAAATAAAACATGCCATTGAGATGGCAGAGACTGGGATGATAAGCACTGTCCCGTCTTTT GCTTCTCTAAATGACTGTCGTGAGGAAAAAATAAGGAAGCTCACACCTGGTGAAATGGAT GAAATTCGAGAAATTTTATCAAGGAATCTCTATCAAATCCGTCAGCGAACTCTGTCCTAC AACAGACACAATCTGACCACGGACACAAATGAGAGGCAAGCCAAGGAGCTGATCCGCCGA CGAAGGCACAGTCTGCGGGAAATTCGCAAGGACAGCAGCTTGAACCGGGAGCACAGGGCT TCTACTACAACCTCCCGATATTTATCCTTACCGAAAAATACAAAGCTTCCAGAAAAGCTA CAAAAGAAAAAGAGTATTTCTAGCGCAGGTGGCAACAGCAGCGACTCAGACCCAGACATG GGGACCACCGTCCTCAATCTGCAGCCCCGAGCGCGGCGCTTCTTGCCGGAACAGTTCTCC AAGAAAGCCCCCCAAGCCTATAAGATGGAATGGAAGAACGAGGTGGACGTTGAGTCTGGG CCAGGTCAGCCCCTCACCTCCCTGGCGGCCCACAGCAAGGAGGGGGGCCTCAAGTCCCCA GGCATGCTCTGCCAGCCCCTCCTCTCCAAAGGCCAGTCTGGCTGCGTGCGCGGGGACAGT GTGAATGAAGGCGTCCGGCCCAAGCCGCCCCCCAGGCTGGTCCCTAGGGCATCCGAACCT GGAAACCAGAAAGGTCGACCCGGGAGTGAGAAGCCTTAATGGAAACGGCCAAAGCGGACC TGGAGGATCGGCCCCTCCCCGCTGGGGCTTGTTCCTCCGCCATCATCACACCACCACCCA ATCCACTTAGAACCGTCCATTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTGGGGTCACAACTTTTGGAGAGACAAGTTTAAGAAGTTTGATGACAAATACCTGCGG AAGCTTTTGATTCGGGAGAACCAACCCAAGTCTAGCATTGTGTCCTTATATAAAAAGCTC GAAATAAAACATGCCATTGAGATGGCAGAGACTGGGATGATAAGCACTGTCCCGTCTTTT GCTTCTCTAAATGACTGTCGTGAGGAAAAAATAAGGAAGCTCACACCTGGTGAAATGGAT GAAATTCGAGAAATTTTATCAAGGAATCTCTATCAAATCCGTCAGCGAACTCTGTCCTAC AACAGACACAATCTGACCACGGACACAAATGAGAGGCAAGCCAAGGAGCTGATCCGCCGA CGAAGGCACAGTCTGCGGGAAATTCGCAAGGACAGCAGCTTGAACCGGGAGCACAGGGCT TCTACTACAACCTCCCGATATTTATCCTTACCGAAAAATACAAAGCTTCCAGAAAAGCTA CAAAAGAAAAAGAGTATTTCTAGCGCAGGTGGCAACAGCAGCGACTCAGACCCAGACATG GGGACCACCGTCCTCAATCTGCAGCCCCGAGCGCGGCGCTTCTTGCCGGAACAGTTCTCC AAGAAAGCCCCCCAAGCCTATAAGATGGAATGGAAGAACGAGGTGGACGTTGAGTCTGGG CCAGGTCAGCCCCTCACCTCCCTGGCGGCCCACAGCAAGGAGGGGGGCCTCAAGTCCCCA GGCATGCTCTGCCAGCCCCTCCTCTCCAAAGGCCAGTCTGGCTGCGTGCGCGGGGACAGT GTGAATGAAGGCGTCCGGCCCAAGCCGCCCCCCAGGCTGGTCCCTAGGGCATCCGAACCT GGAAACCAGAAAGGTCGACCCGGGAGTGAGAAGCCTTAATGGAAACGGCCAAAGCGGACC TGGAGGATCGGCCCCTCCCCGCTGGGGCTTGTTCCTCCGCCATCATCACACCACCACCCA ATCCACTTAGAACCGTCCATTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 72-191, + strand, RNAz p=0.595157 | |
| 792-900, - strand, RNAz p=0.546572 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-191, + strand, RNAz p=0.595157 | |
| 792-900, - strand, RNAz p=0.546572 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 27-191, gnl|bosTau2|chr11 (4826107-4826271) | |
| 27-191, gnl|canFam2|chr10 (43473381-43473207) | |
| 27-191, gnl|dasNov1|scaffold_4139 (8871-9045) | |
| 27-191, gnl|echTel1|scaffold_311170 (120-294) | |
| 27-191, gnl|fr1|chrUn (92365663-92365483) | |
| 27-191, gnl|galGal2|chr1 (127120720-127120892) | |
| 27-191, gnl|hg17|chr2 (102776042-102776216) | |
| 27-191, gnl|Hg17|chr2 (102776044-102776208) | |
| 27-191, gnl|loxAfr1|scaffold_453 (188630-188804) | |
| 27-191, gnl|mm7|chr1 (41003394-41003568) | |
| 27-191, gnl|Mm7|chr1 (41003396-41003560) | |
| 27-191, gnl|monDom2|scaffold_11 (20941698-20941872) | |
| 27-191, gnl|oryCun1|scaffold_189771 (13311-13137) | |
| 27-191, gnl|panTro1|chr12 (105665162-105665336) | |
| 27-191, gnl|rheMac2|chr13 (102605491-102605665) | |
| 27-191, gnl|rn3|chr9 (39910061-39910235) | |
| 27-191, gnl|tetNig1|chr2 (8958642-8958822) | |
| 27-191, gnl|xenTro1|scaffold_85 (413620-413791) | |
| 293-418, gnl|bosTau2|chr11 (4835450-4835578) | |
| 293-418, gnl|canFam2|chr10 (43465777-43465615) | |
| 293-418, gnl|dasNov1|scaffold_4139 (12027-12167) | |
| 293-418, gnl|echTel1|scaffold_89173 (1287-1451) | |
| 293-418, gnl|fr1|chrUn (92364411-92364239) | |
| 293-418, gnl|galGal2|chr1 (127122430-127122601) | |
| 293-418, gnl|hg17|chr2 (102779484-102779653) | |
| 293-418, gnl|Hg17|chr2 (102779525-102779653) | |
| 293-418, gnl|loxAfr1|scaffold_50732 (3453-3617) | |
| 293-418, gnl|mm7|chr1 (41007032-41007195) | |
| 293-418, gnl|Mm7|chr1 (41007067-41007195) | |
| 293-418, gnl|monDom2|scaffold_11 (20947468-20947637) | |
| 293-418, gnl|oryCun1|scaffold_189771 (4130-3961) | |
| 293-418, gnl|panTro1|chr12 (105668590-105668760) | |
| 293-418, gnl|rheMac2|chr13 (102612450-102612613) | |
| 293-418, gnl|rn3|chr9 (39913911-39914073) | |
| 293-418, gnl|xenTro1|scaffold_85 (415128-415278) | |
| 507-984, gnl|bosTau2|chr11 (4838600-4839076) | |
| 507-984, gnl|canFam2|chr10 (43462980-43462173) | |
| 507-984, gnl|dasNov1|scaffold_4139 (14850-15649) | |
| 507-984, gnl|echTel1|scaffold_324822 (37078-37868) | |
| 507-984, gnl|galGal2|chr1 (127126666-127127512) | |
| 507-984, gnl|hg17|chr2 (102783079-102783881) | |
| 507-984, gnl|Hg17|chr2 (102783094-102783570) | |
| 507-984, gnl|loxAfr1|scaffold_50732 (7139-7944) | |
| 507-984, gnl|mm7|chr1 (41009106-41009889) | |
| 507-984, gnl|Mm7|chr1 (41009122-41009584) | |
| 507-984, gnl|monDom2|scaffold_11 (20952242-20953072) | |
| 507-984, gnl|oryCun1|scaffold_198734 (43154-43939) | |
| 507-984, gnl|panTro1|chr12 (105671846-105672648) | |
| 507-984, gnl|rheMac2|chr13 (102615784-102616587) | |
| 507-984, gnl|rn3|chr9 (39915964-39916770) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-191, gnl|bosTau2|chr11 (4826107-4826271) | |
| 27-191, gnl|canFam2|chr10 (43473381-43473207) | |
| 27-191, gnl|dasNov1|scaffold_4139 (8871-9045) | |
| 27-191, gnl|echTel1|scaffold_311170 (120-294) | |
| 27-191, gnl|fr1|chrUn (92365663-92365483) | |
| 27-191, gnl|galGal2|chr1 (127120720-127120892) | |
| 27-191, gnl|hg17|chr2 (102776042-102776216) | |
| 27-191, gnl|Hg17|chr2 (102776044-102776208) | |
| 27-191, gnl|loxAfr1|scaffold_453 (188630-188804) | |
| 27-191, gnl|mm7|chr1 (41003394-41003568) | |
| 27-191, gnl|Mm7|chr1 (41003396-41003560) | |
| 27-191, gnl|monDom2|scaffold_11 (20941698-20941872) | |
| 27-191, gnl|oryCun1|scaffold_189771 (13311-13137) | |
| 27-191, gnl|panTro1|chr12 (105665162-105665336) | |
| 27-191, gnl|rheMac2|chr13 (102605491-102605665) | |
| 27-191, gnl|rn3|chr9 (39910061-39910235) | |
| 27-191, gnl|tetNig1|chr2 (8958642-8958822) | |
| 27-191, gnl|xenTro1|scaffold_85 (413620-413791) | |
| 293-418, gnl|bosTau2|chr11 (4835450-4835578) | |
| 293-418, gnl|canFam2|chr10 (43465777-43465615) | |
| 293-418, gnl|dasNov1|scaffold_4139 (12027-12167) | |
| 293-418, gnl|echTel1|scaffold_89173 (1287-1451) | |
| 293-418, gnl|fr1|chrUn (92364411-92364239) | |
| 293-418, gnl|galGal2|chr1 (127122430-127122601) | |
| 293-418, gnl|hg17|chr2 (102779484-102779653) | |
| 293-418, gnl|Hg17|chr2 (102779525-102779653) | |
| 293-418, gnl|loxAfr1|scaffold_50732 (3453-3617) | |
| 293-418, gnl|mm7|chr1 (41007032-41007195) | |
| 293-418, gnl|Mm7|chr1 (41007067-41007195) | |
| 293-418, gnl|monDom2|scaffold_11 (20947468-20947637) | |
| 293-418, gnl|oryCun1|scaffold_189771 (4130-3961) | |
| 293-418, gnl|panTro1|chr12 (105668590-105668760) | |
| 293-418, gnl|rheMac2|chr13 (102612450-102612613) | |
| 293-418, gnl|rn3|chr9 (39913911-39914073) | |
| 293-418, gnl|xenTro1|scaffold_85 (415128-415278) | |
| 507-984, gnl|bosTau2|chr11 (4838600-4839076) | |
| 507-984, gnl|canFam2|chr10 (43462980-43462173) | |
| 507-984, gnl|dasNov1|scaffold_4139 (14850-15649) | |
| 507-984, gnl|echTel1|scaffold_324822 (37078-37868) | |
| 507-984, gnl|galGal2|chr1 (127126666-127127512) | |
| 507-984, gnl|hg17|chr2 (102783079-102783881) | |
| 507-984, gnl|Hg17|chr2 (102783094-102783570) | |
| 507-984, gnl|loxAfr1|scaffold_50732 (7139-7944) | |
| 507-984, gnl|mm7|chr1 (41009106-41009889) | |
| 507-984, gnl|Mm7|chr1 (41009122-41009584) | |
| 507-984, gnl|monDom2|scaffold_11 (20952242-20953072) | |
| 507-984, gnl|oryCun1|scaffold_198734 (43154-43939) | |
| 507-984, gnl|panTro1|chr12 (105671846-105672648) | |
| 507-984, gnl|rheMac2|chr13 (102615784-102616587) | |
| 507-984, gnl|rn3|chr9 (39915964-39916770) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) |