Ss1.1-rduo434b_e14.5.5
|
AGCGGCGGCAGCGGCTCTAGCGGCAGTAGCAGCAGCGCCGGGTCCCGAGTGGAGGTGCTC
TTAGCGGTGTTGTTTCTCGAGCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGT
TCGTGTTCGTCCGCGGAGATCTCTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGC
GACTGAGTCCGCGATGGAGAGAGAAAAGGAACAATTCCGTAAACTCTTTATTGGTGGCTT
GAGCTTTGAAACTACAGAAGAAAGTTTGAGGAACTACTACGAGCAATGGGGAAAACTTAC
AGATTGTGTGGTCATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAAC
TTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCACATTCAATTGATGG
ACGAGTGGTTGAGCCAAAACGTGCTGTTGCAAGAGAGGAATCTGGAAAGCCAGGGGCTCA
TGTAACTGTGAAGAAGCTATTTGTTGGTGGAATTAAAGAAGATACTGAGGAACACCATCT
TAGAGATTACTTTGAGGAGTATGGGAAAATTGATACCATTGAGATAATTACTGATAGGCA
GTCTGGAAAGAAAAGAGGCTTTGGATTTGTTACTTTTGATGACCATGATCCTGTGGATAA
GATTGTGTTGCAAAAGTACCATACCATCAATGGTCATAATGCAGAAGTGAGAAAGGCTTT
GTCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGAAGTGGAAGAGGAGGCAACTTTGG
TTTTGGAGATTCTCGTGGTGGTGGTGGAAATTTTGGACCAGGACCTGGAAGTAACTTTAG
AGGAGGATCTGATGGATATGGAAGTGGTCGTGGATTTGGGGATGGCTATAATGGGTATGG
AGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGG
ATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGA
CAACTATGGAGGAGGAAATTATGGAAGTGGAAATTATAATGATTTTGGAAATTATAACCA
GCAACCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGG
GGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGG
AGGGAGAAGCCGATATTGAGCTTCTTCCTATTTTGCCATGGGCTTCACTGTATAAATAGG
AGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATCGAAATAACAATGTTAAG
GAAACTCTTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGAAGACACCAGAGCAG
ATGCAGAGAGCCATTTTGTGAATGGATTGGATTATTTAATAACATTACCTTACTGTGGAG
GAAGGATTGTAAAAAAAAAAAAATGCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGT
TTCTTTCTAGTGGTCTTTGTAAGAGTATAGAAGCATTCCTTCTTTGATAATGTTAAATTT
GTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAGCT
ATTAGCCAGGATCATGGTGTAATAAGACATAACGTTTTTCCTTTAAAAAAATTTAAGTGC
GTGTGTAGAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCGGCGGCAGCGGCTCTAGCGGCAGTAGCAGCAGCGCCGGGTCCCGAGTGGAGGTGCTC
TTAGCGGTGTTGTTTCTCGAGCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGT
TCGTGTTCGTCCGCGGAGATCTCTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGC
GACTGAGTCCGCGATGGAGAGAGAAAAGGAACAATTCCGTAAACTCTTTATTGGTGGCTT
GAGCTTTGAAACTACAGAAGAAAGTTTGAGGAACTACTACGAGCAATGGGGAAAACTTAC
AGATTGTGTGGTCATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAAC
TTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCACATTCAATTGATGG
ACGAGTGGTTGAGCCAAAACGTGCTGTTGCAAGAGAGGAATCTGGAAAGCCAGGGGCTCA
TGTAACTGTGAAGAAGCTATTTGTTGGTGGAATTAAAGAAGATACTGAGGAACACCATCT
TAGAGATTACTTTGAGGAGTATGGGAAAATTGATACCATTGAGATAATTACTGATAGGCA
GTCTGGAAAGAAAAGAGGCTTTGGATTTGTTACTTTTGATGACCATGATCCTGTGGATAA
GATTGTGTTGCAAAAGTACCATACCATCAATGGTCATAATGCAGAAGTGAGAAAGGCTTT
GTCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGAAGTGGAAGAGGAGGCAACTTTGG
TTTTGGAGATTCTCGTGGTGGTGGTGGAAATTTTGGACCAGGACCTGGAAGTAACTTTAG
AGGAGGATCTGATGGATATGGAAGTGGTCGTGGATTTGGGGATGGCTATAATGGGTATGG
AGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGG
ATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGA
CAACTATGGAGGAGGAAATTATGGAAGTGGAAATTATAATGATTTTGGAAATTATAACCA
GCAACCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGG
GGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGG
AGGGAGAAGCCGATATTGAGCTTCTTCCTATTTTGCCATGGGCTTCACTGTATAAATAGG
AGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATCGAAATAACAATGTTAAG
GAAACTCTTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGAAGACACCAGAGCAG
ATGCAGAGAGCCATTTTGTGAATGGATTGGATTATTTAATAACATTACCTTACTGTGGAG
GAAGGATTGTAAAAAAAAAAAAATGCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGT
TTCTTTCTAGTGGTCTTTGTAAGAGTATAGAAGCATTCCTTCTTTGATAATGTTAAATTT
GTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAGCT
ATTAGCCAGGATCATGGTGTAATAAGACATAACGTTTTTCCTTTAAAAAAATTTAAGTGC
GTGTGTAGAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
22-412, gnl|bosTau2|chr21 (47465855-47466239) |
|
22-412, gnl|Hg17|chr7 (26013609-26010220) |
|
22-412, gnl|Mm7|chr6 (51433103-51430207) |
| |
|
450-901, gnl|bosTau2|chr10 (16293758-16294207) |
|
450-901, gnl|Hg17|chr15 (63896635-63895885) |
|
450-901, gnl|Mm7|chrX (136962156-136962613) |
| |
|
1268-1764, gnl|bosTau2|chr4 (49739577-49739083) |
|
1268-1764, gnl|Hg17|chr7 (26005172-26004704) |
|
1268-1764, gnl|Mm7|chr6 (51426483-51426015) |
| |
|
1434-1743, gnl|bosTau2|chr12 (45098790-45098493) |
|
1434-1743, gnl|Hg17|chr13 (105839927-105839613) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
22-412, gnl|bosTau2|chr21 (47465855-47466239) |
|
22-412, gnl|Hg17|chr7 (26013609-26010220) |
|
22-412, gnl|Mm7|chr6 (51433103-51430207) |
| |
|
450-901, gnl|bosTau2|chr10 (16293758-16294207) |
|
450-901, gnl|Hg17|chr15 (63896635-63895885) |
|
450-901, gnl|Mm7|chrX (136962156-136962613) |
| |
|
1268-1764, gnl|bosTau2|chr4 (49739577-49739083) |
|
1268-1764, gnl|Hg17|chr7 (26005172-26004704) |
|
1268-1764, gnl|Mm7|chr6 (51426483-51426015) |
| |
|
1434-1743, gnl|bosTau2|chr12 (45098790-45098493) |
|
1434-1743, gnl|Hg17|chr13 (105839927-105839613) |
|
isp (3.15789) |
|
thg (3.04298) |
|
bfe (2.8473) |
|
mgp (1.84544) |
|
cje (1.81758) |
|
cut (1.69924) |
|
spc (1.36039) |
|
kid (1.16762) |
|
ldo (1.16403) |
|
med (1.16252) |
|
elu (1.15607) |
|
ste (1.08167) |
|
fty (1.05504) |
|
ova (1.03306) |
|
hea (1.02249) |
|
vin (0.997672) |
|
bla (0.994777) |
|
fcc (0.988924) |
|
col (0.975039) |
|
fco (0.943248) |
|
sug (0.891039) |
|
duo (0.864006) |
|
cki (0.826173) |
|
ssp (0.813118) |
|
csk (0.70373) |
|
ill (0.702371) |
|
cst (0.700182) |
|
sin (0.69979) |
|
ece (0.687916) |
|
mcp (0.682594) |
|
eye (0.682012) |
|
lyg (0.665513) |
|
nmm (0.664011) |
|
nms (0.641574) |
|
tbr (0.616713) |
|
eli (0.607257) |
|
spl (0.572738) |
|
hlv (0.557025) |
|
nep (0.551775) |
|
nca (0.547495) |
|
che (0.545256) |
|
fce (0.543183) |
|
gul (0.532765) |
|
pro (0.512033) |
|
nje (0.49776) |
|
nbm (0.496623) |
|
jej (0.494609) |
|
eje (0.494169) |
|
pgl (0.473934) |
|
liv (0.438853) |
|
lnt (0.426925) |
|
pla (0.401016) |
|
nlu (0.383362) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
sto (0.359648) |
|
clu (0.358938) |
|
ebs (0.354904) |
|
ton (0.351) |
|
fbs (0.350693) |
|
ecc (0.345105) |
|
jca (0.34188) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
cty (0.31224) |
|
sme (0.305437) |
|
lun (0.300978) |
|
fat (0.294855) |
|
pty (0.285429) |
|
ese (0.253004) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
fli (0.202881) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
mga (0.160205) |
|
cag (0.151194) |
|
ski (0.146735) |
|
lin (0.145603) |
|
cov (0.132153) |
|
cly (0.120642) |
|
isp (3.15789) |
|
thg (3.04298) |
|
bfe (2.8473) |
|
mgp (1.84544) |
|
cje (1.81758) |
|
cut (1.69924) |
|
spc (1.36039) |
|
kid (1.16762) |
|
ldo (1.16403) |
|
med (1.16252) |
|
elu (1.15607) |
|
ste (1.08167) |
|
fty (1.05504) |
|
ova (1.03306) |
|
hea (1.02249) |
|
vin (0.997672) |
|
bla (0.994777) |
|
fcc (0.988924) |
|
col (0.975039) |
|
fco (0.943248) |
|
sug (0.891039) |
|
duo (0.864006) |
|
cki (0.826173) |
|
ssp (0.813118) |
|
csk (0.70373) |
|
ill (0.702371) |
|
cst (0.700182) |
|
sin (0.69979) |
|
ece (0.687916) |
|
mcp (0.682594) |
|
eye (0.682012) |
|
lyg (0.665513) |
|
nmm (0.664011) |
|
nms (0.641574) |
|
tbr (0.616713) |
|
eli (0.607257) |
|
spl (0.572738) |
|
hlv (0.557025) |
|
nep (0.551775) |
|
nca (0.547495) |
|
che (0.545256) |
|
fce (0.543183) |
|
gul (0.532765) |
|
pro (0.512033) |
|
nje (0.49776) |
|
nbm (0.496623) |
|
jej (0.494609) |
|
eje (0.494169) |
|
pgl (0.473934) |
|
liv (0.438853) |
|
lnt (0.426925) |
|
pla (0.401016) |
|
nlu (0.383362) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
sto (0.359648) |
|
clu (0.358938) |
|
ebs (0.354904) |
|
ton (0.351) |
|
fbs (0.350693) |
|
ecc (0.345105) |
|
jca (0.34188) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
cty (0.31224) |
|
sme (0.305437) |
|
lun (0.300978) |
|
fat (0.294855) |
|
pty (0.285429) |
|
ese (0.253004) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
fli (0.202881) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
mga (0.160205) |
|
cag (0.151194) |
|
ski (0.146735) |
|
lin (0.145603) |
|
cov (0.132153) |
|
cly (0.120642) |
