Non-Coding RNA Search

Ss1.1-rduo437b_o18.5

Sequence:


               
               CCCATGGACGTGTCAGCTTCTGGACAGAGTGCTTTTTATAGAACTAATTTCTAAATCTGA
AGCTCAAGGAATAGACAGTGTTTTTTTTTTTTGTTTTTTTTTTTGTGACATTATGGATGG
GTCACCCAGAGCAAGAGTGTCATCTCCCAACAGCAGCAGGGGCTGGCCCTTTTAGAAAGG
GTTTGCTATCCCAGAAATCACCAATCTGGGTTTTCCAAACTTCCCTAGTAACCTTGCTTC
CTTCTGCAATGTTAGTAATGCCTTAAGCTGACAATTGCTATTTTGCAGAACAGTTTTCCT
ATTTGCTAATCTGGTAACTTGCCTATGAACCTGGGCTGGATATGAGAGACAGGTGTGACC
TGGAGCATGAACAGAGGTGCAGCTGGGGTGATTAACTAATAAAACTTTTTTGTACAGTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATGGACGTGTCAGCTTCTGGACAGAGTGCTTTTTATAGAACTAATTTCTAAATCTGA
AGCTCAAGGAATAGACAGTGTTTTTTTTTTTTGTTTTTTTTTTTGTGACATTATGGATGG
GTCACCCAGAGCAAGAGTGTCATCTCCCAACAGCAGCAGGGGCTGGCCCTTTTAGAAAGG
GTTTGCTATCCCAGAAATCACCAATCTGGGTTTTCCAAACTTCCCTAGTAACCTTGCTTC
CTTCTGCAATGTTAGTAATGCCTTAAGCTGACAATTGCTATTTTGCAGAACAGTTTTCCT
ATTTGCTAATCTGGTAACTTGCCTATGAACCTGGGCTGGATATGAGAGACAGGTGTGACC
TGGAGCATGAACAGAGGTGCAGCTGGGGTGATTAACTAATAAAACTTTTTTGTACAGTAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-264, - strand, RNAz p=0.602474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-264, - strand, RNAz p=0.602474

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-420, gnl|bosTau2|chr17 (30314099-30314510)
               

               
               1-420, gnl|Hg17|chr12 (109274424-109274003)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-420, gnl|bosTau2|chr17 (30314099-30314510)
               

               
               1-420, gnl|Hg17|chr12 (109274424-109274003)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               duo (0.345602)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               ese (0.126502)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               ese (0.126502)

	1-420, gnl\|bosTau2\|chr17 (30314099-30314510)
	1-420, gnl\|Hg17\|chr12 (109274424-109274003)

	duo (0.345602)
	fce (0.271592)
	cbe (0.239234)
	fcc (0.197785)
	sto (0.179824)
	fty (0.17584)
	eye (0.170503)
	ese (0.126502)