Non-Coding RNA Search

Ss1.1-rebs02c_i14.5.5

Sequence:


               
               AAAAAAAACTGTGAACTGACTTAAGATCAGAGTTTACTTTTCAGATCAAATGGTTTATGG
TTTTACAAATGTGATTTCTACTTGCCAACTTTTTTTTTGTAACTCGTTCCCTTATACCTC
CTTGATTGAATACCAGACAGCCTAGACCTCAGTACAAAAGGTATTGAAACATTTTTGATA
CATAACAGACCTCAGTCTTTTTTAAAAATTAATATATTTTCAGGCGTATTTTTGTACAGT
GAAAAGGGAACATTCTTGCTGTGTTTTTTCAGTAAGACTTTCAGGCACTTCTTCCCTTTG
GATTTCTTTTTTTCCTCTGTTTTTTAGCATGCAAGTATGTGGGTACGTTATGTCCTGGTT
TTAAAAAGGATTAAAATTTTAAAATAATCCTTGCATCTAAAGGCCTTGTGGTTTAAAAAA
AAAAAAAGCAAACTTTTTTTTGTACAGCTATAGTAGAGATTTGTTCAATATTTGTAGGTA
AAGATTTATTGAAAATGGTGATATAGACCTCAGAGCTGTTATCTTAGTTTAAAGATTGTA
TATGTACTGTACTATAGTAGGACTATGTATCTCATACGCTGTGATATGTGGATGGGGCCC
CAGATGGAAGGTTTGAAACTGGATTCTCGATTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAACTGTGAACTGACTTAAGATCAGAGTTTACTTTTCAGATCAAATGGTTTATGG
TTTTACAAATGTGATTTCTACTTGCCAACTTTTTTTTTGTAACTCGTTCCCTTATACCTC
CTTGATTGAATACCAGACAGCCTAGACCTCAGTACAAAAGGTATTGAAACATTTTTGATA
CATAACAGACCTCAGTCTTTTTTAAAAATTAATATATTTTCAGGCGTATTTTTGTACAGT
GAAAAGGGAACATTCTTGCTGTGTTTTTTCAGTAAGACTTTCAGGCACTTCTTCCCTTTG
GATTTCTTTTTTTCCTCTGTTTTTTAGCATGCAAGTATGTGGGTACGTTATGTCCTGGTT
TTAAAAAGGATTAAAATTTTAAAATAATCCTTGCATCTAAAGGCCTTGTGGTTTAAAAAA
AAAAAAAGCAAACTTTTTTTTGTACAGCTATAGTAGAGATTTGTTCAATATTTGTAGGTA
AAGATTTATTGAAAATGGTGATATAGACCTCAGAGCTGTTATCTTAGTTTAAAGATTGTA
TATGTACTGTACTATAGTAGGACTATGTATCTCATACGCTGTGATATGTGGATGGGGCCC
CAGATGGAAGGTTTGAAACTGGATTCTCGATTTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-317, + strand, RNAz p=0.889164

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-317, + strand, RNAz p=0.889164

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003108, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003108, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr11 (71468356-71467715)
               

               
               1-636, gnl|Hg17|chr2 (5785522-5786153)
               

               
               1-636, gnl|Mm7|chr12 (25176238-25175582)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr11 (71468356-71467715)
               

               
               1-636, gnl|Hg17|chr2 (5785522-5786153)
               

               
               1-636, gnl|Mm7|chr12 (25176238-25175582)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)

	1-636, gnl\|bosTau2\|chr11 (71468356-71467715)
	1-636, gnl\|Hg17\|chr2 (5785522-5786153)
	1-636, gnl\|Mm7\|chr12 (25176238-25175582)