Ss1.1-rebs02c_i16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACCGTCTACGACGCCTCTCACATGGGACACGCCAGGTCCTACGTCTCCTTCGACATCT TGAGGAGGGTGCTCAGGAATTACTTCAAGTTCGACGTGTTTTACTGCATGAACATCACGG ACGTCGATGACAAGATCATCAGGCGGGCCCGGCAGAACTACCTGTTCGAGCGGTACCGGG AGAAGCAGCCCTCGGCAGCCCAGCTCCTGGAGGACGTGCACGCCGCCCTGCAGCCGTTTG CAGCAAAGTTAAAGGAGACCACGGATCCCGACAAGAAGCAGATGCTGGAGCGCCTGGAGC GTGCGGTGACGCGGGCCGCCGAGCCGCTGGAGGAGGCCGTGCGGGCCAGCCTGGCGGGGG AGGAGCTGGACGGCCGCGTGCAGGTGTTGTTGGCAGAAGCAAAGGACCTGCTTTCCGACT GGCTGGATTCCACCCATGGCAGCGAAGTGACGGACAATTCCATCTTCTCGCAGCTGCCCA AGTTCTGGGAGGCGGAATTCCACAAGGACATGGAGGCCCTGAACGTCCTCCCTCCAGACG TCTTAACCCGCGTTAGTGAGTACGTGCCCGAGATCGTGGACTTTGTCCAGAAGATCATGG ACAATGGTTACGGCTACGCTTCCAACGGGTCCGTCTACTTCGATACGGTGAAGTTTGCTA ACAGCGAGGGACACTGCTACGGGAAGCTGGTGCCGGAGGCTGTCGGGGACCAGAGAGCCC TGCAGGAGGGCGAGGGCGACCTGAGCATCTCGGCCGAGCGCCTGAGCGAGAAGCGGTCCC CCAACGACTTCGCCCTCTGGAAGGCGTCCAAGCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACCGTCTACGACGCCTCTCACATGGGACACGCCAGGTCCTACGTCTCCTTCGACATCT TGAGGAGGGTGCTCAGGAATTACTTCAAGTTCGACGTGTTTTACTGCATGAACATCACGG ACGTCGATGACAAGATCATCAGGCGGGCCCGGCAGAACTACCTGTTCGAGCGGTACCGGG AGAAGCAGCCCTCGGCAGCCCAGCTCCTGGAGGACGTGCACGCCGCCCTGCAGCCGTTTG CAGCAAAGTTAAAGGAGACCACGGATCCCGACAAGAAGCAGATGCTGGAGCGCCTGGAGC GTGCGGTGACGCGGGCCGCCGAGCCGCTGGAGGAGGCCGTGCGGGCCAGCCTGGCGGGGG AGGAGCTGGACGGCCGCGTGCAGGTGTTGTTGGCAGAAGCAAAGGACCTGCTTTCCGACT GGCTGGATTCCACCCATGGCAGCGAAGTGACGGACAATTCCATCTTCTCGCAGCTGCCCA AGTTCTGGGAGGCGGAATTCCACAAGGACATGGAGGCCCTGAACGTCCTCCCTCCAGACG TCTTAACCCGCGTTAGTGAGTACGTGCCCGAGATCGTGGACTTTGTCCAGAAGATCATGG ACAATGGTTACGGCTACGCTTCCAACGGGTCCGTCTACTTCGATACGGTGAAGTTTGCTA ACAGCGAGGGACACTGCTACGGGAAGCTGGTGCCGGAGGCTGTCGGGGACCAGAGAGCCC TGCAGGAGGGCGAGGGCGACCTGAGCATCTCGGCCGAGCGCCTGAGCGAGAAGCGGTCCC CCAACGACTTCGCCCTCTGGAAGGCGTCCAAGCCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 381-526, gnl|bosTau2|chr29 (43294143-43294288) | |
| 381-526, gnl|canFam2|chr18 (50004705-50004560) | |
| 381-526, gnl|canFam2|chr18 (50004553-50004724) | |
| 381-526, gnl|danRer3|chr7 (21967223-21967078) | |
| 381-526, gnl|danRer3|chr7 (21967071-21967245) | |
| 381-526, gnl|dasNov1|scaffold_80437 (8549-8403) | |
| 381-526, gnl|dasNov1|scaffold_80437 (8397-8569) | |
| 381-526, gnl|echTel1|scaffold_241053 (2925-3068) | |
| 381-526, gnl|echTel1|scaffold_241053 (3075-2907) | |
| 381-526, gnl|fr1|chrUn (228185405-228185255) | |
| 381-526, gnl|fr1|chrUn (228185248-228185422) | |
| 381-526, gnl|galGal2|chr5 (10642809-10642635) | |
| 381-526, gnl|hg17|chr11 (3007103-3007277) | |
| 381-526, gnl|Hg17|chr11 (3007252-3007107) | |
| 381-526, gnl|hg17|chr15 (66829418-66829565) | |
| 381-526, gnl|loxAfr1|scaffold_22086 (1094-1237) | |
| 381-526, gnl|loxAfr1|scaffold_22086 (1244-1072) | |
| 381-526, gnl|mm7|chr7 (140004006-140003865) | |
| 381-526, gnl|mm7|chr7 (140003860-140004031) | |
| 381-526, gnl|Mm7|chr7 (140004009-140003875) | |
| 381-526, gnl|monDom2|scaffold_153 (105058-105216) | |
| 381-526, gnl|oryCun1|scaffold_169881 (2625-2771) | |
| 381-526, gnl|oryCun1|scaffold_169881 (2777-2605) | |
| 381-526, gnl|panTro1|chr16 (67348498-67348645) | |
| 381-526, gnl|panTro1|chr9 (3192901-3193075) | |
| 381-526, gnl|rheMac2|chr14 (3037722-3037896) | |
| 381-526, gnl|rheMac2|chr7 (47366037-47366184) | |
| 381-526, gnl|rn3|chr1 (204108430-204108291) | |
| 381-526, gnl|rn3|chr1 (204108284-204108452) | |
| 381-526, gnl|tetNig1|chrUn_random (6575919-6576069) | |
| 381-526, gnl|tetNig1|chrUn_random (6576075-6575912) | |
| 381-526, gnl|xenTro1|scaffold_3695 (12635-12788) | |
| 607-736, gnl|bosTau2|chr29 (43295194-43295323) | |
| 607-736, gnl|canFam2|chr18 (50002248-50002424) | |
| 607-736, gnl|danRer3|chr7 (21965118-21965260) | |
| 607-736, gnl|dasNov1|scaffold_80437 (5829-5966) | |
| 607-736, gnl|fr1|chrUn (228184892-228185031) | |
| 607-736, gnl|galGal2|chr5 (10644882-10644724) | |
| 607-736, gnl|hg17|chr11 (3004472-3004653) | |
| 607-736, gnl|Hg17|chr11 (3004610-3004481) | |
| 607-736, gnl|loxAfr1|scaffold_22086 (4737-4561) | |
| 607-736, gnl|mm7|chr7 (140001777-140001955) | |
| 607-736, gnl|Mm7|chr7 (140001920-140001792) | |
| 607-736, gnl|monDom2|scaffold_153 (99197-99385) | |
| 607-736, gnl|oryCun1|scaffold_169881 (3980-3834) | |
| 607-736, gnl|panTro1|chr9 (3190270-3190452) | |
| 607-736, gnl|rheMac2|chr14 (3036108-3036289) | |
| 607-736, gnl|rn3|chr1 (204105809-204105987) | |
| 607-736, gnl|tetNig1|chrUn_random (6576443-6576274) | |
| 607-736, gnl|xenTro1|scaffold_3695 (11470-11632) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 381-526, gnl|bosTau2|chr29 (43294143-43294288) | |
| 381-526, gnl|canFam2|chr18 (50004705-50004560) | |
| 381-526, gnl|canFam2|chr18 (50004553-50004724) | |
| 381-526, gnl|danRer3|chr7 (21967223-21967078) | |
| 381-526, gnl|danRer3|chr7 (21967071-21967245) | |
| 381-526, gnl|dasNov1|scaffold_80437 (8549-8403) | |
| 381-526, gnl|dasNov1|scaffold_80437 (8397-8569) | |
| 381-526, gnl|echTel1|scaffold_241053 (2925-3068) | |
| 381-526, gnl|echTel1|scaffold_241053 (3075-2907) | |
| 381-526, gnl|fr1|chrUn (228185405-228185255) | |
| 381-526, gnl|fr1|chrUn (228185248-228185422) | |
| 381-526, gnl|galGal2|chr5 (10642809-10642635) | |
| 381-526, gnl|hg17|chr11 (3007103-3007277) | |
| 381-526, gnl|Hg17|chr11 (3007252-3007107) | |
| 381-526, gnl|hg17|chr15 (66829418-66829565) | |
| 381-526, gnl|loxAfr1|scaffold_22086 (1094-1237) | |
| 381-526, gnl|loxAfr1|scaffold_22086 (1244-1072) | |
| 381-526, gnl|mm7|chr7 (140004006-140003865) | |
| 381-526, gnl|mm7|chr7 (140003860-140004031) | |
| 381-526, gnl|Mm7|chr7 (140004009-140003875) | |
| 381-526, gnl|monDom2|scaffold_153 (105058-105216) | |
| 381-526, gnl|oryCun1|scaffold_169881 (2625-2771) | |
| 381-526, gnl|oryCun1|scaffold_169881 (2777-2605) | |
| 381-526, gnl|panTro1|chr16 (67348498-67348645) | |
| 381-526, gnl|panTro1|chr9 (3192901-3193075) | |
| 381-526, gnl|rheMac2|chr14 (3037722-3037896) | |
| 381-526, gnl|rheMac2|chr7 (47366037-47366184) | |
| 381-526, gnl|rn3|chr1 (204108430-204108291) | |
| 381-526, gnl|rn3|chr1 (204108284-204108452) | |
| 381-526, gnl|tetNig1|chrUn_random (6575919-6576069) | |
| 381-526, gnl|tetNig1|chrUn_random (6576075-6575912) | |
| 381-526, gnl|xenTro1|scaffold_3695 (12635-12788) | |
| 607-736, gnl|bosTau2|chr29 (43295194-43295323) | |
| 607-736, gnl|canFam2|chr18 (50002248-50002424) | |
| 607-736, gnl|danRer3|chr7 (21965118-21965260) | |
| 607-736, gnl|dasNov1|scaffold_80437 (5829-5966) | |
| 607-736, gnl|fr1|chrUn (228184892-228185031) | |
| 607-736, gnl|galGal2|chr5 (10644882-10644724) | |
| 607-736, gnl|hg17|chr11 (3004472-3004653) | |
| 607-736, gnl|Hg17|chr11 (3004610-3004481) | |
| 607-736, gnl|loxAfr1|scaffold_22086 (4737-4561) | |
| 607-736, gnl|mm7|chr7 (140001777-140001955) | |
| 607-736, gnl|Mm7|chr7 (140001920-140001792) | |
| 607-736, gnl|monDom2|scaffold_153 (99197-99385) | |
| 607-736, gnl|oryCun1|scaffold_169881 (3980-3834) | |
| 607-736, gnl|panTro1|chr9 (3190270-3190452) | |
| 607-736, gnl|rheMac2|chr14 (3036108-3036289) | |
| 607-736, gnl|rn3|chr1 (204105809-204105987) | |
| 607-736, gnl|tetNig1|chrUn_random (6576443-6576274) | |
| 607-736, gnl|xenTro1|scaffold_3695 (11470-11632) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |