Non-Coding RNA Search

Ss1.1-rebs02c_i17.5

Sequence:


               
               TTTTGCCCTTTTAAATTCCACATTCAGTCTAATTATTGTTTTCTGCACTCCCCTTTCATT
GAGGCACAAGAAATCGGTTTCCCTTTAAGTAGCTCTGCTGTACCTAGTTAATGAGAATAT
GCATAATCATGACAATACTGCTTTTGAAAACCACACTGTACTCAGAGGAATACTAGCTTG
GTGAAACCTGTCTTTTGATTATTTGTTGTGACACATTCCTACATACTCTGCACTGGGCAT
GGTTTTTTTCTGTCCCAGGGAAAAGGAAAACCTTACTTAATCTGATTTTGGCACTGACAG
CACACATATCTTTTATTTTTCCTTTTTAAGCATTTTTTTTAAGAGATGAAAGGAAAATAA
TAGTGGGGTTGCCAAACATGAAAACTATAATCACAGTTGAGGATCAGGATATAAATCAAA
TTCTAGGTCTTGGGACCCTCTGTGGAAATATTTTCTAACCAGAATTTCAATTTGGCCTTT
TCAAAGGAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGCCCTTTTAAATTCCACATTCAGTCTAATTATTGTTTTCTGCACTCCCCTTTCATT
GAGGCACAAGAAATCGGTTTCCCTTTAAGTAGCTCTGCTGTACCTAGTTAATGAGAATAT
GCATAATCATGACAATACTGCTTTTGAAAACCACACTGTACTCAGAGGAATACTAGCTTG
GTGAAACCTGTCTTTTGATTATTTGTTGTGACACATTCCTACATACTCTGCACTGGGCAT
GGTTTTTTTCTGTCCCAGGGAAAAGGAAAACCTTACTTAATCTGATTTTGGCACTGACAG
CACACATATCTTTTATTTTTCCTTTTTAAGCATTTTTTTTAAGAGATGAAAGGAAAATAA
TAGTGGGGTTGCCAAACATGAAAACTATAATCACAGTTGAGGATCAGGATATAAATCAAA
TTCTAGGTCTTGGGACCCTCTGTGGAAATATTTTCTAACCAGAATTTCAATTTGGCCTTT
TCAAAGGAAGGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr22 (24000376-24000872)
               

               
               1-492, gnl|Hg17|chr3 (71816246-71815749)
               

               
               1-492, gnl|Mm7|chr6 (99714732-99714263)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr22 (24000376-24000872)
               

               
               1-492, gnl|Hg17|chr3 (71816246-71815749)
               

               
               1-492, gnl|Mm7|chr6 (99714732-99714263)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.354904)
               

               
               hea (0.204499)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               hea (0.204499)

	1-492, gnl\|bosTau2\|chr22 (24000376-24000872)
	1-492, gnl\|Hg17\|chr3 (71816246-71815749)
	1-492, gnl\|Mm7\|chr6 (99714732-99714263)