Non-Coding RNA Search

Ss1.1-rebs02c_i22.5

Sequence:


               
               TACTGCTGGCTTTCAGCTCCTGGACTCTGTGCTCAGATTCAGAAGAGGAAATGAAAGCGT
TAGAAGCAGATTTATTGACCAATATGCATACATCAAAGATAAGCAAAGCAAGTGTTCCCT
CCTGGAAAATGAGCCTGCTGAATGTGTGCAGTCTTATAAATAACCTGAACAGCCAAGCTG
AGGAAACGGGAGAATTTCATGAGGAGGAGCTTATGACAAGAAGGAAATTTCCCACTGCCC
TGGATGGCTTTAGCTTGGAGGCAATGCTGACAATATACCAGCTCCGAAAAATCTGTCACA
GCAGGGCCTTTCAACATTGGGAGTTGATTCAAGAAGATGTTCTTGATGCTGGAAATGACA
AAAATGAAAAGGAGGAAGTTATAAAGAGAAAAATTCCTTACATCCTGAAACGGCAGTTGT
ATGAGAATAAACCCAGAAGACCCTACATTCTCAAGAGAGGTTCTTACTACTACTGAGAGG
ATAAATATTTTATTTACATGTGATTGTGATTTACCACCCTTTAATTAAATATAAAAATAT
ATTTGTGTGGAAATATGACAGAACGCAATTGTCTCTTCTATAATTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGCTGGCTTTCAGCTCCTGGACTCTGTGCTCAGATTCAGAAGAGGAAATGAAAGCGT
TAGAAGCAGATTTATTGACCAATATGCATACATCAAAGATAAGCAAAGCAAGTGTTCCCT
CCTGGAAAATGAGCCTGCTGAATGTGTGCAGTCTTATAAATAACCTGAACAGCCAAGCTG
AGGAAACGGGAGAATTTCATGAGGAGGAGCTTATGACAAGAAGGAAATTTCCCACTGCCC
TGGATGGCTTTAGCTTGGAGGCAATGCTGACAATATACCAGCTCCGAAAAATCTGTCACA
GCAGGGCCTTTCAACATTGGGAGTTGATTCAAGAAGATGTTCTTGATGCTGGAAATGACA
AAAATGAAAAGGAGGAAGTTATAAAGAGAAAAATTCCTTACATCCTGAAACGGCAGTTGT
ATGAGAATAAACCCAGAAGACCCTACATTCTCAAGAGAGGTTCTTACTACTACTGAGAGG
ATAAATATTTTATTTACATGTGATTGTGATTTACCACCCTTTAATTAAATATAAAAATAT
ATTTGTGTGGAAATATGACAGAACGCAATTGTCTCTTCTATAATTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|265037|gb|AAB25268.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|265037|gb|AAB25268.1|

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               322-588, gnl|bosTau2|chr5 (13193280-13193546)
               

               
               322-588, gnl|canFam2|chr15 (30384756-30385222)
               

               
               322-588, gnl|dasNov1|scaffold_5016 (138812-139262)
               

               
               322-588, gnl|galGal2|chr1 (38979827-38980338)
               

               
               322-588, gnl|hg17|chr12 (84778328-84778797)
               

               
               322-588, gnl|Hg17|chr12 (84778467-84778736)
               

               
               322-588, gnl|loxAfr1|scaffold_29300 (17162-17627)
               

               
               322-588, gnl|mm7|chr10 (101969241-101968803)
               

               
               322-588, gnl|Mm7|chr10 (101969130-101968863)
               

               
               322-588, gnl|monDom2|scaffold_36 (21512994-21513453)
               

               
               322-588, gnl|oryCun1|scaffold_168409 (18699-19157)
               

               
               322-588, gnl|panTro1|chr10 (86873690-86874159)
               

               
               322-588, gnl|rheMac2|chr11 (82888017-82888483)
               

               
               322-588, gnl|rn3|chr7 (40495398-40494939)
               

               
               322-588, gnl|xenTro1|scaffold_237 (1494228-1493733)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               322-588, gnl|bosTau2|chr5 (13193280-13193546)
               

               
               322-588, gnl|canFam2|chr15 (30384756-30385222)
               

               
               322-588, gnl|dasNov1|scaffold_5016 (138812-139262)
               

               
               322-588, gnl|galGal2|chr1 (38979827-38980338)
               

               
               322-588, gnl|hg17|chr12 (84778328-84778797)
               

               
               322-588, gnl|Hg17|chr12 (84778467-84778736)
               

               
               322-588, gnl|loxAfr1|scaffold_29300 (17162-17627)
               

               
               322-588, gnl|mm7|chr10 (101969241-101968803)
               

               
               322-588, gnl|Mm7|chr10 (101969130-101968863)
               

               
               322-588, gnl|monDom2|scaffold_36 (21512994-21513453)
               

               
               322-588, gnl|oryCun1|scaffold_168409 (18699-19157)
               

               
               322-588, gnl|panTro1|chr10 (86873690-86874159)
               

               
               322-588, gnl|rheMac2|chr11 (82888017-82888483)
               

               
               322-588, gnl|rn3|chr7 (40495398-40494939)
               

               
               322-588, gnl|xenTro1|scaffold_237 (1494228-1493733)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               sin (0.524843)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	322-588, gnl\|bosTau2\|chr5 (13193280-13193546)
	322-588, gnl\|canFam2\|chr15 (30384756-30385222)
	322-588, gnl\|dasNov1\|scaffold_5016 (138812-139262)
	322-588, gnl\|galGal2\|chr1 (38979827-38980338)
	322-588, gnl\|hg17\|chr12 (84778328-84778797)
	322-588, gnl\|Hg17\|chr12 (84778467-84778736)
	322-588, gnl\|loxAfr1\|scaffold_29300 (17162-17627)
	322-588, gnl\|mm7\|chr10 (101969241-101968803)
	322-588, gnl\|Mm7\|chr10 (101969130-101968863)
	322-588, gnl\|monDom2\|scaffold_36 (21512994-21513453)
	322-588, gnl\|oryCun1\|scaffold_168409 (18699-19157)
	322-588, gnl\|panTro1\|chr10 (86873690-86874159)
	322-588, gnl\|rheMac2\|chr11 (82888017-82888483)
	322-588, gnl\|rn3\|chr7 (40495398-40494939)
	322-588, gnl\|xenTro1\|scaffold_237 (1494228-1493733)

	sin (0.524843)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)