Ss1.1-rebs02c_l16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCTCCCGGTGCTCCCCCCGGCGCCCGCCCCGCGTCGGTGAGGGCCCGGCCTGGAGGCC CGGAGCCATGGGCTGCATCGGCTCCCGGACCGTGGGAAATGAGGTGATTGCCGTCGACTG GAAGGGCCTGAAAGATGTGGACCAAATCAACATGGACAGCACCAGCTCGCTGCATGGGAG CAGCCTGCACCGGCCGTCCACCGAGCAAACCCGGACCGACTTCTCCTGGGATGGCATCAA TCTCTCCATGGAGGACACCACGTCCATCCTTCCGAAGCTCAAGCGAAACTCGAACGCCTA TGGCATCGGGGCCCTGGCCAAGTCATCATTCTCAGGGATTTCTCGAAGCATGAAGGACCA CGTGACAAAGCCCACAGCCATGGGGCAGGGCCGGGTGGCCCATATGATTGAATGGCAGGG CTGGGGGAAGGCACCAGCCATTCAGCCGCAACACAGCCACGAGGCGGTGCGCAGGGACAC CGATGCCTACTCCGACCTCAGCGACGGCGAGGAAGGAGGCACGCTTCCTGGCAGGTGTCA TGGAACAGTTTGCTATTTCCGAGGCCACTCTCATGGCCTGGTCTTCCATGGATGGTGAGG ACATGAGTGTCAACTCCACCCAGGAGCCACTGGGCTGCAACTACAGTGACAACTACCAGG AGCTGATGGAGAGTCAGGATGCCCTCGCTCAAGCCCCGATGGACGGATGGCCTCACTCCT ATGTGTCCCAGGGCATGTACTGNTCTGGGCTCATCGGATGCCTGGGAAGCAAGCGACCAG TCCCTCATTGCCTCTCCGGCCACAGGATCCTACCTTGGCCCTGCATTTGATGACTCACAG CCCAGCTTGCATGAAATGGGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAGGAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCTCCCGGTGCTCCCCCCGGCGCCCGCCCCGCGTCGGTGAGGGCCCGGCCTGGAGGCC CGGAGCCATGGGCTGCATCGGCTCCCGGACCGTGGGAAATGAGGTGATTGCCGTCGACTG GAAGGGCCTGAAAGATGTGGACCAAATCAACATGGACAGCACCAGCTCGCTGCATGGGAG CAGCCTGCACCGGCCGTCCACCGAGCAAACCCGGACCGACTTCTCCTGGGATGGCATCAA TCTCTCCATGGAGGACACCACGTCCATCCTTCCGAAGCTCAAGCGAAACTCGAACGCCTA TGGCATCGGGGCCCTGGCCAAGTCATCATTCTCAGGGATTTCTCGAAGCATGAAGGACCA CGTGACAAAGCCCACAGCCATGGGGCAGGGCCGGGTGGCCCATATGATTGAATGGCAGGG CTGGGGGAAGGCACCAGCCATTCAGCCGCAACACAGCCACGAGGCGGTGCGCAGGGACAC CGATGCCTACTCCGACCTCAGCGACGGCGAGGAAGGAGGCACGCTTCCTGGCAGGTGTCA TGGAACAGTTTGCTATTTCCGAGGCCACTCTCATGGCCTGGTCTTCCATGGATGGTGAGG ACATGAGTGTCAACTCCACCCAGGAGCCACTGGGCTGCAACTACAGTGACAACTACCAGG AGCTGATGGAGAGTCAGGATGCCCTCGCTCAAGCCCCGATGGACGGATGGCCTCACTCCT ATGTGTCCCAGGGCATGTACTGNTCTGGGCTCATCGGATGCCTGGGAAGCAAGCGACCAG TCCCTCATTGCCTCTCCGGCCACAGGATCCTACCTTGGCCCTGCATTTGATGACTCACAG CCCAGCTTGCATGAAATGGGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAGGAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 386-483, - strand, RNAz p=0.533467 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 386-483, - strand, RNAz p=0.533467 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 95-205, gnl|bosTau2|chr4 (57733105-57733215) | |
| 95-205, gnl|canFam2|chr16 (9315977-9315853) | |
| 95-205, gnl|dasNov1|scaffold_21666 (1032-908) | |
| 95-205, gnl|echTel1|scaffold_169112 (4615-4737) | |
| 95-205, gnl|galGal2|chr1 (71667621-71667497) | |
| 95-205, gnl|hg17|chr7 (142573966-142574090) | |
| 95-205, gnl|Hg17|chr7 (142574080-142573970) | |
| 95-205, gnl|loxAfr1|scaffold_103770 (4471-4594) | |
| 95-205, gnl|mm7|chr6 (42264885-42265009) | |
| 95-205, gnl|Mm7|chr6 (42264999-42264889) | |
| 95-205, gnl|panTro1|chr6 (145371257-145371381) | |
| 95-205, gnl|rheMac2|chr3 (180907562-180907686) | |
| 95-205, gnl|rn3|chr4 (70365121-70365245) | |
| 331-536, gnl|bosTau2|chr4 (57734801-57735005) | |
| 331-536, gnl|canFam2|chr16 (9317629-9317412) | |
| 331-536, gnl|danRer3|chr16 (10509834-10509622) | |
| 331-536, gnl|echTel1|scaffold_169112 (3291-3497) | |
| 331-536, gnl|fr1|chrUn (234768882-234769071) | |
| 331-536, gnl|galGal2|chr1 (71672581-71672364) | |
| 331-536, gnl|hg17|chr7 (142572755-142572972) | |
| 331-536, gnl|Hg17|chr7 (142572959-142572755) | |
| 331-536, gnl|loxAfr1|scaffold_160943 (4002-4192) | |
| 331-536, gnl|mm7|chr6 (42263768-42263985) | |
| 331-536, gnl|Mm7|chr6 (42263972-42263768) | |
| 331-536, gnl|monDom2|scaffold_7 (1950637-1950853) | |
| 331-536, gnl|oryCun1|scaffold_197916 (14925-15142) | |
| 331-536, gnl|panTro1|chr6 (145370046-145370263) | |
| 331-536, gnl|rheMac2|chr3 (180906356-180906573) | |
| 331-536, gnl|rn3|chr4 (70364002-70364219) | |
| 331-536, gnl|tetNig1|chr8 (8852412-8852630) | |
| 678-899, gnl|bosTau2|chr4 (57737374-57737594) | |
| 678-899, gnl|Hg17|chr7 (142570953-142570733) | |
| 678-899, gnl|Mm7|chr6 (42261614-42261394) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-205, gnl|bosTau2|chr4 (57733105-57733215) | |
| 95-205, gnl|canFam2|chr16 (9315977-9315853) | |
| 95-205, gnl|dasNov1|scaffold_21666 (1032-908) | |
| 95-205, gnl|echTel1|scaffold_169112 (4615-4737) | |
| 95-205, gnl|galGal2|chr1 (71667621-71667497) | |
| 95-205, gnl|hg17|chr7 (142573966-142574090) | |
| 95-205, gnl|Hg17|chr7 (142574080-142573970) | |
| 95-205, gnl|loxAfr1|scaffold_103770 (4471-4594) | |
| 95-205, gnl|mm7|chr6 (42264885-42265009) | |
| 95-205, gnl|Mm7|chr6 (42264999-42264889) | |
| 95-205, gnl|panTro1|chr6 (145371257-145371381) | |
| 95-205, gnl|rheMac2|chr3 (180907562-180907686) | |
| 95-205, gnl|rn3|chr4 (70365121-70365245) | |
| 331-536, gnl|bosTau2|chr4 (57734801-57735005) | |
| 331-536, gnl|canFam2|chr16 (9317629-9317412) | |
| 331-536, gnl|danRer3|chr16 (10509834-10509622) | |
| 331-536, gnl|echTel1|scaffold_169112 (3291-3497) | |
| 331-536, gnl|fr1|chrUn (234768882-234769071) | |
| 331-536, gnl|galGal2|chr1 (71672581-71672364) | |
| 331-536, gnl|hg17|chr7 (142572755-142572972) | |
| 331-536, gnl|Hg17|chr7 (142572959-142572755) | |
| 331-536, gnl|loxAfr1|scaffold_160943 (4002-4192) | |
| 331-536, gnl|mm7|chr6 (42263768-42263985) | |
| 331-536, gnl|Mm7|chr6 (42263972-42263768) | |
| 331-536, gnl|monDom2|scaffold_7 (1950637-1950853) | |
| 331-536, gnl|oryCun1|scaffold_197916 (14925-15142) | |
| 331-536, gnl|panTro1|chr6 (145370046-145370263) | |
| 331-536, gnl|rheMac2|chr3 (180906356-180906573) | |
| 331-536, gnl|rn3|chr4 (70364002-70364219) | |
| 331-536, gnl|tetNig1|chr8 (8852412-8852630) | |
| 678-899, gnl|bosTau2|chr4 (57737374-57737594) | |
| 678-899, gnl|Hg17|chr7 (142570953-142570733) | |
| 678-899, gnl|Mm7|chr6 (42261614-42261394) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |