Non-Coding RNA Search

Ss1.1-rebs03c_b21.5

Sequence:


               
               TTCTAATTTCCCAAATTAAATTTATTTAGCATGTACATTATTTTAAGAAAAAACCAAACA
TTTGAGGAGAATTATAGCCAGAATTCAATTATAACCATTCTATTCCCACTCCTTTTTTAA
TTTTTTCTCTTGTCTTTTGCTCTGGAATTTAATGGAAAAAAAAGATATACAAAAGCTGTC
ACTGGTCAGCTGGCTCTTTTTCCTATGAAATACATCAGTACCTTTCTCCATCCATTGTTC
TCAGCGATGACCACGGAGCCTGAATATAACAGGAAAACCAACATTTACATAACGGGTTGC
TCCTGTCCTTCCACACACCTTTCCTACCTGTGTGACTAACCTAATTTTGCTAGTTCCATA
AATACACAATTAGTTTAGTAAACAAGCCATCGCAGTGTACCATGTACAGTTCATGGTGAG
AGCTAAAGATGGACACAGACTTCTAGGAGCTTTATTCATGCTGATTACTTAATCCAATTG
TATAGATTGAATATTTGAATATTGAGTGGAAGGAATTTACACTCTGTTTAAGTGATGGGA
TTCCATCAAGATAGCACTCATGATCATGACCTTTTTGGTAGTGTTCTTAAACAAAATTCT
ACAGACTAAATGTTAGAGATGATCCTGCATTTTCAATTTTAACTAATTCTATGCCCTTTC
TTAAAACCCAACCCCTGTGCATGCTTTCTCAGTCTTGTGGTGGGACTGGATACAATGACT
GACCCTCCCCCACTCTTGCCCCCTGCCCCCACCCTTAAATGCCATTTTCCATGGAGTTCA
AAAAAAAAATTTTTTTTTTCCTTTACCTTACATATCATAGTGAATGGTTTCCCCAGTGTA
TATGAATGTTTTAAGTGTCTCCAATAGCTTATACAGTTTAGGGGCTTTCCGATACCCATT
TAATAAGATTTAATCATTTGCTAATGGAAATTTTACCACTTTCCATTTTTCCCTCTGTCA
CCAAATTTCAGCTCTTAGGAGCTGCTCTACAATTCTGAAATTGCTTTTCTTGCCTCTCTT
TAGTCACTTGTCACAGGAGGTTCCTGCTCAGTAATGATATTGTGAGTTAGATTAATAACT
TTTTTTGCACTTCGGATTTAGAAAAAAAGATCCTGTTTCCATTTGAAAGGAACTGTATGT
AAGCTTTTATCTTTTAACCAACTGAACAACACACCAAAAGCAGCCTAGGGATGAGCATTT
CCTTGAGAGCAATTAGGTTATTCACCTGGTATAAAAAAAAAAAAACCTATTTACTATGAA
AAAAAAAAATCTGTGACTTTATTGATTTAAAAGACAGCATCAAAAACTGAAACGGAAGGG
AAAAAAAATAGCTTCTCTGCACTCATTTGGAGCTCCCCAAAAAGGAGCCATCGTGATGGA
GCATCAAGACTGGGCTGCCCTTCAGAGAACATACTGCAGCGCTGGAGTCCTGCTTACCGC
GCTGCCTGCAGCCCTTCTCCTTCCGGCCTGGAAGGAAGTCCTCTTGAGCCTCCCTGAGAA
GCACCTCCCACTCCTCTCTCTTGTTCTGAATGGTGTTTGTGTCAGTCTGCAGCTGTGTAT
GGTATTATGTCTTATAATCCTGCATCACTTCTATCCAGTCATATCTAATGTAGAAAATTA
GTTTCCAGTGAAAGTAATATGTAGTGCTTTTATGATATTTGTGTGCAATATCCCCTCTTC
CATTGAGGATATTTGATGTAAAAGAAAAAAAAAAAAACCTCAGTTCCACAATAAAAATAC
AAAAGTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTAATTTCCCAAATTAAATTTATTTAGCATGTACATTATTTTAAGAAAAAACCAAACA
TTTGAGGAGAATTATAGCCAGAATTCAATTATAACCATTCTATTCCCACTCCTTTTTTAA
TTTTTTCTCTTGTCTTTTGCTCTGGAATTTAATGGAAAAAAAAGATATACAAAAGCTGTC
ACTGGTCAGCTGGCTCTTTTTCCTATGAAATACATCAGTACCTTTCTCCATCCATTGTTC
TCAGCGATGACCACGGAGCCTGAATATAACAGGAAAACCAACATTTACATAACGGGTTGC
TCCTGTCCTTCCACACACCTTTCCTACCTGTGTGACTAACCTAATTTTGCTAGTTCCATA
AATACACAATTAGTTTAGTAAACAAGCCATCGCAGTGTACCATGTACAGTTCATGGTGAG
AGCTAAAGATGGACACAGACTTCTAGGAGCTTTATTCATGCTGATTACTTAATCCAATTG
TATAGATTGAATATTTGAATATTGAGTGGAAGGAATTTACACTCTGTTTAAGTGATGGGA
TTCCATCAAGATAGCACTCATGATCATGACCTTTTTGGTAGTGTTCTTAAACAAAATTCT
ACAGACTAAATGTTAGAGATGATCCTGCATTTTCAATTTTAACTAATTCTATGCCCTTTC
TTAAAACCCAACCCCTGTGCATGCTTTCTCAGTCTTGTGGTGGGACTGGATACAATGACT
GACCCTCCCCCACTCTTGCCCCCTGCCCCCACCCTTAAATGCCATTTTCCATGGAGTTCA
AAAAAAAAATTTTTTTTTTCCTTTACCTTACATATCATAGTGAATGGTTTCCCCAGTGTA
TATGAATGTTTTAAGTGTCTCCAATAGCTTATACAGTTTAGGGGCTTTCCGATACCCATT
TAATAAGATTTAATCATTTGCTAATGGAAATTTTACCACTTTCCATTTTTCCCTCTGTCA
CCAAATTTCAGCTCTTAGGAGCTGCTCTACAATTCTGAAATTGCTTTTCTTGCCTCTCTT
TAGTCACTTGTCACAGGAGGTTCCTGCTCAGTAATGATATTGTGAGTTAGATTAATAACT
TTTTTTGCACTTCGGATTTAGAAAAAAAGATCCTGTTTCCATTTGAAAGGAACTGTATGT
AAGCTTTTATCTTTTAACCAACTGAACAACACACCAAAAGCAGCCTAGGGATGAGCATTT
CCTTGAGAGCAATTAGGTTATTCACCTGGTATAAAAAAAAAAAAACCTATTTACTATGAA
AAAAAAAAATCTGTGACTTTATTGATTTAAAAGACAGCATCAAAAACTGAAACGGAAGGG
AAAAAAAATAGCTTCTCTGCACTCATTTGGAGCTCCCCAAAAAGGAGCCATCGTGATGGA
GCATCAAGACTGGGCTGCCCTTCAGAGAACATACTGCAGCGCTGGAGTCCTGCTTACCGC
GCTGCCTGCAGCCCTTCTCCTTCCGGCCTGGAAGGAAGTCCTCTTGAGCCTCCCTGAGAA
GCACCTCCCACTCCTCTCTCTTGTTCTGAATGGTGTTTGTGTCAGTCTGCAGCTGTGTAT
GGTATTATGTCTTATAATCCTGCATCACTTCTATCCAGTCATATCTAATGTAGAAAATTA
GTTTCCAGTGAAAGTAATATGTAGTGCTTTTATGATATTTGTGTGCAATATCCCCTCTTC
CATTGAGGATATTTGATGTAAAAGAAAAAAAAAAAAACCTCAGTTCCACAATAAAAATAC
AAAAGTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               767-886, - strand, RNAz p=0.687456
               

               
               926-1084, - strand, RNAz p=0.90156
               

               
               1145-1258, - strand, RNAz p=0.633006

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               767-886, - strand, RNAz p=0.687456
               

               
               926-1084, - strand, RNAz p=0.90156
               

               
               1145-1258, - strand, RNAz p=0.633006

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1406, gnl|bosTau2|chr20 (6416845-6418203)
               

               
               1-1406, gnl|Hg17|chr5 (71539414-71540799)
               

               
               1-1406, gnl|Mm7|chr13 (96492987-96491595)
               


               
               1459-1748, gnl|bosTau2|chr20 (6418216-6418501)
               

               
               1459-1748, gnl|Hg17|chr5 (71540812-71541143)
               

               
               1459-1748, gnl|Mm7|chr13 (96491571-96491262)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1406, gnl|bosTau2|chr20 (6416845-6418203)
               

               
               1-1406, gnl|Hg17|chr5 (71539414-71540799)
               

               
               1-1406, gnl|Mm7|chr13 (96492987-96491595)
               


               
               1459-1748, gnl|bosTau2|chr20 (6418216-6418501)
               

               
               1459-1748, gnl|Hg17|chr5 (71540812-71541143)
               

               
               1459-1748, gnl|Mm7|chr13 (96491571-96491262)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               ecc (1.72553)
               

               
               fcc (1.18671)
               

               
               ebs (1.06471)
               

               
               ece (0.917221)
               

               
               fhi (0.847889)
               

               
               fce (0.814775)
               

               
               fbs (0.701385)
               

               
               eye (0.682012)
               

               
               hyp (0.571347)
               

               
               gul (0.355177)
               

               
               spc (0.226732)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (1.72553)
               

               
               fcc (1.18671)
               

               
               ebs (1.06471)
               

               
               ece (0.917221)
               

               
               fhi (0.847889)
               

               
               fce (0.814775)
               

               
               fbs (0.701385)
               

               
               eye (0.682012)
               

               
               hyp (0.571347)
               

               
               gul (0.355177)
               

               
               spc (0.226732)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	767-886, - strand, RNAz p=0.687456
	926-1084, - strand, RNAz p=0.90156
	1145-1258, - strand, RNAz p=0.633006

	1-1406, gnl\|bosTau2\|chr20 (6416845-6418203)
	1-1406, gnl\|Hg17\|chr5 (71539414-71540799)
	1-1406, gnl\|Mm7\|chr13 (96492987-96491595)

	1459-1748, gnl\|bosTau2\|chr20 (6418216-6418501)
	1459-1748, gnl\|Hg17\|chr5 (71540812-71541143)
	1459-1748, gnl\|Mm7\|chr13 (96491571-96491262)

	ecc (1.72553)
	fcc (1.18671)
	ebs (1.06471)
	ece (0.917221)
	fhi (0.847889)
	fce (0.814775)
	fbs (0.701385)
	eye (0.682012)
	hyp (0.571347)
	gul (0.355177)
	spc (0.226732)
	isp (0.150376)
	pty (0.142714)
	nca (0.136874)
	lyg (0.133103)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)