Non-Coding RNA Search

Ss1.1-rebs03c_f3.5

Sequence:


               
               GACAGCGAGGCAGCCCAGCATGGGAAGCAGAAGCCAGAGGACCGAGCCTGGACTGGTAAT
AGGGCTGTCCCCTTTGGCTTTTCCGGGCTGAGCCCATCCTAGGTGTCCCCCTTGCTCCCC
ACCCCCATGGCAGGGGCCGGAGTCAGCTTAGGGTGCTGGCGTGCCACACACCACATAGCC
GGCACCACTGCCTGGTCCCAGGGAACTGGGCTCTCCCACAGGCCCTGGTGACGCCCTGAG
CCCTGGCCACTCCCTCTCCGCTGGGGGCCTGGTGTGGGTCTGCGAGGTGCTGGCCGCAGT
CAGAGGCCTGGCCCCCAGGCCTGCCCTGCCCTTGGGCGCGCTGACCATGTCCTCCCCTCC
CTGGCTGCAGAACAAGGGAGCTGCAGGACGCAGCGGGGTTCTCAGCAGCCCCATGGTTCT
GGGGTCCTCCTGCTGTTCCTCTGAGCAGCTCTGCTGACCCCGCCCTTTCCTGGACCGCCC
CTCTATCCCAGAGGGGTCACCCTGACCCGGCCCGCTGACGGCCTGGCAGCGCTGGCTCTG
CCCCTACAAGGGGCTGCAAGCGAGGCAGGAGGGAGCTGGTCTCCTTCCTTCGCGCCCCAC
CCAGGACCCGGCACCCCCACCTGCACTAGGGCCCCAGGCCTTAAGTCCCCATTGGGGTGA
GGGGGTTTGAGAACGCAAGCCCAGGGAGCAGAGGAGCAGGGCACTGGAAGGTGACATTAG
CTCAGCATGTGACTCGGTGACAGACCAGGTCCCCAGGGGCCGGTGTACGTGTTGTTGTTG
TTGGTTTGTTGTTGCACATTCCAGGATGTCAGTATTTTAACAGGTTCTAAGTGCCTTTTT
CTATCGTAGCTTACGTTTTCCTCCTCTTGGCTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCGAGGCAGCCCAGCATGGGAAGCAGAAGCCAGAGGACCGAGCCTGGACTGGTAAT
AGGGCTGTCCCCTTTGGCTTTTCCGGGCTGAGCCCATCCTAGGTGTCCCCCTTGCTCCCC
ACCCCCATGGCAGGGGCCGGAGTCAGCTTAGGGTGCTGGCGTGCCACACACCACATAGCC
GGCACCACTGCCTGGTCCCAGGGAACTGGGCTCTCCCACAGGCCCTGGTGACGCCCTGAG
CCCTGGCCACTCCCTCTCCGCTGGGGGCCTGGTGTGGGTCTGCGAGGTGCTGGCCGCAGT
CAGAGGCCTGGCCCCCAGGCCTGCCCTGCCCTTGGGCGCGCTGACCATGTCCTCCCCTCC
CTGGCTGCAGAACAAGGGAGCTGCAGGACGCAGCGGGGTTCTCAGCAGCCCCATGGTTCT
GGGGTCCTCCTGCTGTTCCTCTGAGCAGCTCTGCTGACCCCGCCCTTTCCTGGACCGCCC
CTCTATCCCAGAGGGGTCACCCTGACCCGGCCCGCTGACGGCCTGGCAGCGCTGGCTCTG
CCCCTACAAGGGGCTGCAAGCGAGGCAGGAGGGAGCTGGTCTCCTTCCTTCGCGCCCCAC
CCAGGACCCGGCACCCCCACCTGCACTAGGGCCCCAGGCCTTAAGTCCCCATTGGGGTGA
GGGGGTTTGAGAACGCAAGCCCAGGGAGCAGAGGAGCAGGGCACTGGAAGGTGACATTAG
CTCAGCATGTGACTCGGTGACAGACCAGGTCCCCAGGGGCCGGTGTACGTGTTGTTGTTG
TTGGTTTGTTGTTGCACATTCCAGGATGTCAGTATTTTAACAGGTTCTAAGTGCCTTTTT
CTATCGTAGCTTACGTTTTCCTCCTCTTGGCTCCAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               131-876, gnl|bosTau2|chr25 (4290610-4291325)
               

               
               131-876, gnl|Hg17|chr16 (4328733-4329488)
               

               
               131-876, gnl|Mm7|chr16 (4286938-4287606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-876, gnl|bosTau2|chr25 (4290610-4291325)
               

               
               131-876, gnl|Hg17|chr16 (4328733-4329488)
               

               
               131-876, gnl|Mm7|chr16 (4286938-4287606)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ebs (0.354904)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)

	131-876, gnl\|bosTau2\|chr25 (4290610-4291325)
	131-876, gnl\|Hg17\|chr16 (4328733-4329488)
	131-876, gnl\|Mm7\|chr16 (4286938-4287606)