Non-Coding RNA Search

Ss1.1-rebs03c_m14.5

Sequence:


               
               TTCTCTTAGCCTCCTGATGGGTTTGGGTGAGCACATCAGCTGCAGATGTGTGCCGAATTA
CAAGCTGGTTTTTGCAAGGGATGGCTCTTGTAATCCTAACTGCTTGATGATGGGTTTTGG
TTTTCAGGCTCCCCCCCCCCCCAAATCTGCTATGAATGAACATTCATCTTAGAAATACTC
AATTGAGGAAAAAAAGGCTGCCCTTTTAGAGCCCTTTAACGCTGCAAGTGGCGACATGTT
CTGGTTTCTAATTTGGTTCCTTGTGGCCTATCTGGGTTTAAGTATTTTCACTACAAACGT
CTCTCATTAGAGCGTTTGATGGCACGCACCAACACATAAAAGCCGACCTCATTGCATGGA
TTTTGAGGCCAGGGAAAAGCACAAGGAAGTCCTTCCTGATTCTTTCTTAGGGGAACGGGC
TGCAGAGCTAATGCAGACCAGTGAATGCTCGAGATGAAAGAAAGCGCGTGACGTCACGGT
CACCTGTCTTCAGGCTCCTCACAGTTTACTTGAAAGAGGCTTTGGAAAGAGCTAAAGCAA
AAGAAGAAATACATATTTTTAATAATGTAATTTAAGAAAATCCTTGATAGTCAGGACGGA
GGCTTGGTTTGCAGAAGCTGTCATTTGCCCCCGAAACACAGTGTCAAAAGGGAAACATTG
ACGGTTTGATTTGGATTTCCTCTTTGAATCGATGTTTCTCGGTAGAATTCTGTCTCTTCC
CCCACTGTCCCACATTTCTTTGCGAAGGAGGCCTTTAGAAATCGGGCGTGATCCTACTTG
AGCATGTGAGCTAGTCAAATTAGAAACCCAGCCTATTGTCCGTGGCACTCAGAAAGTTAA
TTTAAGAACCAGAGGTAGTCCTGGCTTCCTGCCTGAAACCCAGTGCTTCTATGAAATATT
TGAAAAGAGGAGGAAAACGAGCGATCCATCTTCCTTTTCTCTTTTGTCGGTGTATTTGTT
CCCCCCTCCAATGCTGGTCTTTTTGTAGAAACTCAGTAGAGAAAATCTAGCGAAGCAGTG
TTGCAAAGCCTGCAAGAGTTCCGTTTACAGCTCGACAGCATAGTCACTGATTTCTAAATG
GGCTGGTCCCATCATCTGAAGATTCTGTATAGAATTATTAAAAAAAAAAAATCCATCTTT
CTTTATTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCTTAGCCTCCTGATGGGTTTGGGTGAGCACATCAGCTGCAGATGTGTGCCGAATTA
CAAGCTGGTTTTTGCAAGGGATGGCTCTTGTAATCCTAACTGCTTGATGATGGGTTTTGG
TTTTCAGGCTCCCCCCCCCCCCAAATCTGCTATGAATGAACATTCATCTTAGAAATACTC
AATTGAGGAAAAAAAGGCTGCCCTTTTAGAGCCCTTTAACGCTGCAAGTGGCGACATGTT
CTGGTTTCTAATTTGGTTCCTTGTGGCCTATCTGGGTTTAAGTATTTTCACTACAAACGT
CTCTCATTAGAGCGTTTGATGGCACGCACCAACACATAAAAGCCGACCTCATTGCATGGA
TTTTGAGGCCAGGGAAAAGCACAAGGAAGTCCTTCCTGATTCTTTCTTAGGGGAACGGGC
TGCAGAGCTAATGCAGACCAGTGAATGCTCGAGATGAAAGAAAGCGCGTGACGTCACGGT
CACCTGTCTTCAGGCTCCTCACAGTTTACTTGAAAGAGGCTTTGGAAAGAGCTAAAGCAA
AAGAAGAAATACATATTTTTAATAATGTAATTTAAGAAAATCCTTGATAGTCAGGACGGA
GGCTTGGTTTGCAGAAGCTGTCATTTGCCCCCGAAACACAGTGTCAAAAGGGAAACATTG
ACGGTTTGATTTGGATTTCCTCTTTGAATCGATGTTTCTCGGTAGAATTCTGTCTCTTCC
CCCACTGTCCCACATTTCTTTGCGAAGGAGGCCTTTAGAAATCGGGCGTGATCCTACTTG
AGCATGTGAGCTAGTCAAATTAGAAACCCAGCCTATTGTCCGTGGCACTCAGAAAGTTAA
TTTAAGAACCAGAGGTAGTCCTGGCTTCCTGCCTGAAACCCAGTGCTTCTATGAAATATT
TGAAAAGAGGAGGAAAACGAGCGATCCATCTTCCTTTTCTCTTTTGTCGGTGTATTTGTT
CCCCCCTCCAATGCTGGTCTTTTTGTAGAAACTCAGTAGAGAAAATCTAGCGAAGCAGTG
TTGCAAAGCCTGCAAGAGTTCCGTTTACAGCTCGACAGCATAGTCACTGATTTCTAAATG
GGCTGGTCCCATCATCTGAAGATTCTGTATAGAATTATTAAAAAAAAAAAATCCATCTTT
CTTTATTTTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1152, gnl|bosTau2|chr3 (78748430-78749614)
               

               
               1-1152, gnl|Hg17|chr2 (235185592-235184389)
               

               
               1-1152, gnl|Mm7|chr1 (88603662-88602502)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr3 (78748430-78749614)
               

               
               1-1152, gnl|Hg17|chr2 (235185592-235184389)
               

               
               1-1152, gnl|Mm7|chr1 (88603662-88602502)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               ute (0.265569)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	1-1152, gnl\|bosTau2\|chr3 (78748430-78749614)
	1-1152, gnl\|Hg17\|chr2 (235185592-235184389)
	1-1152, gnl\|Mm7\|chr1 (88603662-88602502)

	ute (0.265569)
	pla (0.133672)
	ret (0.128733)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)