Non-Coding RNA Search

Ss1.1-rebs03c_n13.5

Sequence:


               
               CTGTCTTCTCTGCCCTGGGAGCAGCTCTCCTGCCACAGTCCCTCATCCCCTGAAAATGTA
TGCTTGTGCCAGGTTTGTCTCCACTCCCGCCTTGATCAGGAGAACCTCTCCACTGTTGAG
CCGATCACTGTCTGCAGTGGTGCTGAAACGACCAGAGGCATTGACAGATGAGAGTCACAG
CAGCTTGGCAGCCCCACGTCTCCTGACCACCTCACTTATTCCTAGCCGCAGCTTCCAAAC
CAGTGCCATTTCAAGAGACATTGACACAGCAGCCAAGTTCATTGGAGCTGGGGCTGCCAC
AGTAGGAGTGGCTGGCTCTGGGGCTGGAATTGGGACTGTGTTTGGGAGCCTCATCATTGG
TTATGCCAGGAACCCTTCTCTGAAGCAACAGCTCTTCTCCTACGCCATTCTGGGCTTTGC
CCTCTCGGAGGCCATGGGGCTCTTTTGCCTGATGGTGGCCTTTCTCATCCTCTTCGCCAT
GTGAAGGAGCCGTGTCCACCTCCCGTAGTTCTTTCTCCTGGGTCTCATCTGCCCCGTGTA
TTCCTTTTCTTGTACCTCCCCAGGCAGGCTGGGGAACGTGGTTGGCTCAGGGTTTGACAG
AGGGAAGACAAATAAATACTGTATTAATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCTTCTCTGCCCTGGGAGCAGCTCTCCTGCCACAGTCCCTCATCCCCTGAAAATGTA
TGCTTGTGCCAGGTTTGTCTCCACTCCCGCCTTGATCAGGAGAACCTCTCCACTGTTGAG
CCGATCACTGTCTGCAGTGGTGCTGAAACGACCAGAGGCATTGACAGATGAGAGTCACAG
CAGCTTGGCAGCCCCACGTCTCCTGACCACCTCACTTATTCCTAGCCGCAGCTTCCAAAC
CAGTGCCATTTCAAGAGACATTGACACAGCAGCCAAGTTCATTGGAGCTGGGGCTGCCAC
AGTAGGAGTGGCTGGCTCTGGGGCTGGAATTGGGACTGTGTTTGGGAGCCTCATCATTGG
TTATGCCAGGAACCCTTCTCTGAAGCAACAGCTCTTCTCCTACGCCATTCTGGGCTTTGC
CCTCTCGGAGGCCATGGGGCTCTTTTGCCTGATGGTGGCCTTTCTCATCCTCTTCGCCAT
GTGAAGGAGCCGTGTCCACCTCCCGTAGTTCTTTCTCCTGGGTCTCATCTGCCCCGTGTA
TTCCTTTTCTTGTACCTCCCCAGGCAGGCTGGGGAACGTGGTTGGCTCAGGGTTTGACAG
AGGGAAGACAAATAAATACTGTATTAATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               AT5G2_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               AT5G2_SHEEP

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               186-302, - strand, RNAz p=0.623283
               

               
               235-654, - strand, RNAz p=0.945147
               

               
               383-499, - strand, RNAz p=0.774493

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-302, - strand, RNAz p=0.623283
               

               
               235-654, - strand, RNAz p=0.945147
               

               
               383-499, - strand, RNAz p=0.774493

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-654, gnl|bosTau2|chr17 (12537882-12537230)
               

               
               1-654, gnl|Hg17|chr1 (205830018-205829376)
               

               
               1-654, gnl|Mm7|chr17 (5761883-5761223)
               


               
               235-485, gnl|bosTau2|chr11 (24559149-24559399)
               

               
               235-485, gnl|Hg17|chr10 (70862980-70862730)
               

               
               235-485, gnl|Mm7|chr11 (100471004-100470754)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-654, gnl|bosTau2|chr17 (12537882-12537230)
               

               
               1-654, gnl|Hg17|chr1 (205830018-205829376)
               

               
               1-654, gnl|Mm7|chr17 (5761883-5761223)
               


               
               235-485, gnl|bosTau2|chr11 (24559149-24559399)
               

               
               235-485, gnl|Hg17|chr10 (70862980-70862730)
               

               
               235-485, gnl|Mm7|chr11 (100471004-100470754)

Expressed library(ies): 44 entry(ies)

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Expressed library(ies): 44 entry(ies)

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               col (1.36505)
               

               
               mas (1.05152)
               

               
               nca (0.958117)
               

               
               amn (0.835422)
               

               
               jej (0.692452)
               

               
               ece (0.687916)
               

               
               nje (0.66368)
               

               
               cov (0.660764)
               

               
               nco (0.646935)
               

               
               ese (0.632511)
               

               
               eje (0.593003)
               

               
               med (0.58126)
               

               
               cga (0.558191)
               

               
               fty (0.527519)
               

               
               ton (0.526501)
               

               
               cly (0.482567)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               eli (0.303628)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (1.36505)
               

               
               mas (1.05152)
               

               
               nca (0.958117)
               

               
               amn (0.835422)
               

               
               jej (0.692452)
               

               
               ece (0.687916)
               

               
               nje (0.66368)
               

               
               cov (0.660764)
               

               
               nco (0.646935)
               

               
               ese (0.632511)
               

               
               eje (0.593003)
               

               
               med (0.58126)
               

               
               cga (0.558191)
               

               
               fty (0.527519)
               

               
               ton (0.526501)
               

               
               cly (0.482567)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               eli (0.303628)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	186-302, - strand, RNAz p=0.623283
	235-654, - strand, RNAz p=0.945147
	383-499, - strand, RNAz p=0.774493

	1-654, gnl\|bosTau2\|chr17 (12537882-12537230)
	1-654, gnl\|Hg17\|chr1 (205830018-205829376)
	1-654, gnl\|Mm7\|chr17 (5761883-5761223)

	235-485, gnl\|bosTau2\|chr11 (24559149-24559399)
	235-485, gnl\|Hg17\|chr10 (70862980-70862730)
	235-485, gnl\|Mm7\|chr11 (100471004-100470754)

	col (1.36505)
	mas (1.05152)
	nca (0.958117)
	amn (0.835422)
	jej (0.692452)
	ece (0.687916)
	nje (0.66368)
	cov (0.660764)
	nco (0.646935)
	ese (0.632511)
	eje (0.593003)
	med (0.58126)
	cga (0.558191)
	fty (0.527519)
	ton (0.526501)
	cly (0.482567)
	cli (0.458435)
	cag (0.453583)
	nms (0.427716)
	lnt (0.426925)
	hlv (0.417769)
	fli (0.405762)
	nmm (0.398406)
	ute (0.398353)
	eep (0.367692)
	ill (0.351185)
	eye (0.341006)
	csp (0.322373)
	eli (0.303628)
	fce (0.271592)
	ebs (0.236602)
	ecc (0.23007)
	fcc (0.197785)
	nep (0.183925)
	duo (0.172801)
	cut (0.169924)
	fhi (0.169578)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	che (0.136314)
	pla (0.133672)
	eru (0.120048)
	jca (0.11396)