Non-Coding RNA Search

Ss1.1-rebs03c_p15.5

Sequence:


               
               GGAGAAGCCCTTCAAGTGTGAGTTCGAGGGGTGCGACCGACGCTTTGCTAATAGCAGCGA
CCGCAAGAAGCACATGCATGTGCATACGAGCGACAAACCCTATCTTTGCAAGATGTGCGA
CAAGTCCTACACTCACCCCAGTTCATTGCGCAAATACATGAAGGTCCATGAATCCTCCTC
GCAGGGCTCGCAACCTTCGCCAGCCGCCAGCTCGGGCTATGAGTCCTCCACGCCTCCCAC
CATCGTGTCTCCCTCCACAGACAACCCAACCACCAGCTCCCTGTCGCCCTCCTCCTCCGC
GGTCCACCACACAGCCGGCCACAGTGCGCTCTCTTCCAATTTTAACGAATGGTACGTTTA
AAATCAGAAACAAAACGCAAAACAAAACCCTATTTAAGAGACTGAGCACACACATGTATA
CACAGTATTACTGAAAGAACCCTGAGCATCAAAAGAGCCCCCAACCCACTCTGCAATCCT
ATTTTTTCTAAATCTGTCAATAGACCCAGGACCGAGTAAGAGAGAGAAAGCACCAAACCT
TTACATTTACCCCCCCCTTTTCCCCTTTCCTTTTCTTTTTCTTTTTTCTTCTTTTTTTTT
GGGCAAACGTTTGGTAGCCAAGGGGCGGGAAGGGGGTCAAGGAGACGGCGGCTGTCTGAC
CAAATGCCGCCAACCCCGAGGGCCAGTTTCTCCTCGGAGTCGGAACTGGCTCTCTGGGAT
TCGGCTTTTTTTTTTTTTTTTTTTGCTTTGCATTCTTGTAAATACAGAATTATTAGCTTA
AACCTGTACTGTGGGATTCTGTATATAGTTATATCTCGGTTGGAACGGGCGGGTGGGATC
GTGGCGTTGTGGTCTTTGCATTGGGGAGGGGGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGCCCTTCAAGTGTGAGTTCGAGGGGTGCGACCGACGCTTTGCTAATAGCAGCGA
CCGCAAGAAGCACATGCATGTGCATACGAGCGACAAACCCTATCTTTGCAAGATGTGCGA
CAAGTCCTACACTCACCCCAGTTCATTGCGCAAATACATGAAGGTCCATGAATCCTCCTC
GCAGGGCTCGCAACCTTCGCCAGCCGCCAGCTCGGGCTATGAGTCCTCCACGCCTCCCAC
CATCGTGTCTCCCTCCACAGACAACCCAACCACCAGCTCCCTGTCGCCCTCCTCCTCCGC
GGTCCACCACACAGCCGGCCACAGTGCGCTCTCTTCCAATTTTAACGAATGGTACGTTTA
AAATCAGAAACAAAACGCAAAACAAAACCCTATTTAAGAGACTGAGCACACACATGTATA
CACAGTATTACTGAAAGAACCCTGAGCATCAAAAGAGCCCCCAACCCACTCTGCAATCCT
ATTTTTTCTAAATCTGTCAATAGACCCAGGACCGAGTAAGAGAGAGAAAGCACCAAACCT
TTACATTTACCCCCCCCTTTTCCCCTTTCCTTTTCTTTTTCTTTTTTCTTCTTTTTTTTT
GGGCAAACGTTTGGTAGCCAAGGGGCGGGAAGGGGGTCAAGGAGACGGCGGCTGTCTGAC
CAAATGCCGCCAACCCCGAGGGCCAGTTTCTCCTCGGAGTCGGAACTGGCTCTCTGGGAT
TCGGCTTTTTTTTTTTTTTTTTTTGCTTTGCATTCTTGTAAATACAGAATTATTAGCTTA
AACCTGTACTGTGGGATTCTGTATATAGTTATATCTCGGTTGGAACGGGCGGGTGGGATC
GTGGCGTTGTGGTCTTTGCATTGGGGAGGGGGGAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55621272|ref|XP_516806.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55621272|ref|XP_516806.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-165, gnl|bosTau2|chr12 (40476403-40476567)
               

               
               1-165, gnl|Hg17|chr13 (99435202-99435366)
               

               
               1-165, gnl|Mm7|chr14 (116883157-116883321)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr12 (40476403-40476567)
               

               
               1-165, gnl|Hg17|chr13 (99435202-99435366)
               

               
               1-165, gnl|Mm7|chr14 (116883157-116883321)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	1-165, gnl\|bosTau2\|chr12 (40476403-40476567)
	1-165, gnl\|Hg17\|chr13 (99435202-99435366)
	1-165, gnl\|Mm7\|chr14 (116883157-116883321)