Non-Coding RNA Search

Ss1.1-rebs04c_b10.5

Sequence:


               
               GCCGGCTCTCACCCCTCGGAGAGGCGCGCCGGACAGCAGAGCGCCCGTCGCCCAGCCACG
CCCGCCGGCCAGCCCGCCACCACCATGCTGGGTAGCAAGCGACTGGGGCTGTCCAGACTG
ACCCTCGCCCTGTCCCTGCTGGTGTGCCTGTGTGCGCTGGCCGAGGCGTACCCCTCCAAG
CCCGACAACCCCGGAGAGGACGCGCCGGCGGAGGACTTGGCCAGATACTACTCGGCGTTG
AGACATTACATCAACCTCATCACCAGGCAGAGATACGGAAAACGATCTAGCCCCGAGACA
CTGATTTCAGACCTCTTGATGAGAGAAGGCACGGAAAATGTTCCCAGAACTAGGCTCGAA
GACCCTTCTGTGTGGTGATGGGAAGTGAAACTTGCTCTCCGGTCTTTGCCTATTTTTCAA
CCCCCGTTTTATCCTGTAAGACTCAAGTCTGCTGGCCCTCCCCTTGCATGCAGCCCCTCT
GCTCCTGTCCTCAGACTTTCCCTTGGTCGCCATTGTATATACGTGCATTTAAATAAAGTA
ACCATGCATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGCTCTCACCCCTCGGAGAGGCGCGCCGGACAGCAGAGCGCCCGTCGCCCAGCCACG
CCCGCCGGCCAGCCCGCCACCACCATGCTGGGTAGCAAGCGACTGGGGCTGTCCAGACTG
ACCCTCGCCCTGTCCCTGCTGGTGTGCCTGTGTGCGCTGGCCGAGGCGTACCCCTCCAAG
CCCGACAACCCCGGAGAGGACGCGCCGGCGGAGGACTTGGCCAGATACTACTCGGCGTTG
AGACATTACATCAACCTCATCACCAGGCAGAGATACGGAAAACGATCTAGCCCCGAGACA
CTGATTTCAGACCTCTTGATGAGAGAAGGCACGGAAAATGTTCCCAGAACTAGGCTCGAA
GACCCTTCTGTGTGGTGATGGGAAGTGAAACTTGCTCTCCGGTCTTTGCCTATTTTTCAA
CCCCCGTTTTATCCTGTAAGACTCAAGTCTGCTGGCCCTCCCCTTGCATGCAGCCCCTCT
GCTCCTGTCCTCAGACTTTCCCTTGGTCGCCATTGTATATACGTGCATTTAAATAAAGTA
ACCATGCATTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               NEUY_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               NEUY_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               85-275, gnl|bosTau2|chr4 (41065607-41065417)
               

               
               85-275, gnl|Hg17|chr7 (24098100-24098290)
               

               
               85-275, gnl|Mm7|chr6 (49783648-49783838)
               


               
               352-552, gnl|bosTau2|chr4 (41059912-41059715)
               

               
               352-552, gnl|Hg17|chr7 (24104520-24104718)
               

               
               352-552, gnl|Mm7|chr6 (49789351-49789554)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-275, gnl|bosTau2|chr4 (41065607-41065417)
               

               
               85-275, gnl|Hg17|chr7 (24098100-24098290)
               

               
               85-275, gnl|Mm7|chr6 (49783648-49783838)
               


               
               352-552, gnl|bosTau2|chr4 (41059912-41059715)
               

               
               352-552, gnl|Hg17|chr7 (24104520-24104718)
               

               
               352-552, gnl|Mm7|chr6 (49789351-49789554)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.39557)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               eep (0.122564)

	85-275, gnl\|bosTau2\|chr4 (41065607-41065417)
	85-275, gnl\|Hg17\|chr7 (24098100-24098290)
	85-275, gnl\|Mm7\|chr6 (49783648-49783838)

	352-552, gnl\|bosTau2\|chr4 (41059912-41059715)
	352-552, gnl\|Hg17\|chr7 (24104520-24104718)
	352-552, gnl\|Mm7\|chr6 (49789351-49789554)