Non-Coding RNA Search

Ss1.1-rebs04c_c14.5

Sequence:


               
               GGGAGAGCAGTTGCCGAGATAGCCAAGTTTTGTCACCCAACTAGGTCTGTGCTCCTGGGT
TTGGGGGTCTTCCTTGATCCCCTCCGAGTGGCTGAGGGGATTTATGCAGTAGAATGTGTC
TGAGCCAAACAGGCTTTGGAAAGATTGTTTTCCCACACACATAAAAATCAAAGCTCTCCT
CTCCTCACCCCAGCTGCTGGAAATGGGCCATAATTAAACTGACCTGACAGATTAACCCCC
TGTGCTCGATGCCCATGAAGAGTGTGGTCCCACAGTTGATGGGTTTCATGGCGGAGATGA
GTTATCTGCGATGATATTATATTAAATAGAGTCAAGACTAACTCACTTCATTAAATGGCA
GGTCTGCTGTCTGCTTTCATAGCACTGACAGTGCTGTTTTATTTATTACCTAATAGACGG
CAACACTCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAGCAGTTGCCGAGATAGCCAAGTTTTGTCACCCAACTAGGTCTGTGCTCCTGGGT
TTGGGGGTCTTCCTTGATCCCCTCCGAGTGGCTGAGGGGATTTATGCAGTAGAATGTGTC
TGAGCCAAACAGGCTTTGGAAAGATTGTTTTCCCACACACATAAAAATCAAAGCTCTCCT
CTCCTCACCCCAGCTGCTGGAAATGGGCCATAATTAAACTGACCTGACAGATTAACCCCC
TGTGCTCGATGCCCATGAAGAGTGTGGTCCCACAGTTGATGGGTTTCATGGCGGAGATGA
GTTATCTGCGATGATATTATATTAAATAGAGTCAAGACTAACTCACTTCATTAAATGGCA
GGTCTGCTGTCTGCTTTCATAGCACTGACAGTGCTGTTTTATTTATTACCTAATAGACGG
CAACACTCACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-156, + strand, RNAz p=0.990697

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-156, + strand, RNAz p=0.990697

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152686, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152686, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-431, gnl|bosTau2|chr7 (37310171-37309737)
               

               
               1-431, gnl|Hg17|chr5 (138775664-138775233)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-431, gnl|bosTau2|chr7 (37310171-37309737)
               

               
               1-431, gnl|Hg17|chr5 (138775664-138775233)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ebs (0.236602)
               

               
               nco (0.161734)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               nco (0.161734)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	1-431, gnl\|bosTau2\|chr7 (37310171-37309737)
	1-431, gnl\|Hg17\|chr5 (138775664-138775233)