Non-Coding RNA Search

Ss1.1-rebs04c_c24.5

Sequence:


               
               ATAATTTCCAGGTGACCCATTGGGATTCTTCCAATTTTATTAGCTTATGAATCAATTTGC
CAAAGTCCTCAATCAGTTTGCAAAGTACAAAGTGTAGTTATCATGGTATTCTGGCAGAAA
GTTGGGATCTTAATCTGTGTACCATTCTAGCCCAAATAAAATAACCACCAATGTACAAAG
TTCTTTGGCAATGTCAATAAGTGCCCTATTTCAAATTAAAACCATATTGTGTGTGGTACA
AATGTTGATCAAAATAAGATTCTCTTTTGCCAGAGCAGCCTTCTCTCTTAAGTCATCCTT
CTCTTACTCTATTTGCAGTCTTAAACCAGAATTTTGTGAAGAACAGTGTTATTCATACTT
GACTTTGATGTCGAAAAGCAAGACATCTTGGGAACTATCTCTTTAGAAAGACAGTGTGAT
TCGGACAGTAAATACAGCATAACCTACTCCTAAATGTGTTAATTCTTTTATGGCCATGAG
TCTGAAGAAAGAGAAACATATCGTGTACTATATCTGGGGTAATTTTCATCAGAAAGTCAA
AAGATGAGATGGACTCTCTATGGGAACCAGATAAATTTGAAAAATGGCTTTGGATACATA
GAAAATCAATAGAGGGCTGCTCTCTTTTGTTTTGGAAGAACTGTCGTCATGAAACTTGAG
TTGATGCTCTCTCCTATTTAACAGGAAAACCATTCATGTCTTTAACATATTTCTTCTAAC
TGATGCAAAAAGCTTATGATAGCACGTGCAGCACACATTGATATGTGGATCTGGAGAGTG
AATCAAAACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAATTTCCAGGTGACCCATTGGGATTCTTCCAATTTTATTAGCTTATGAATCAATTTGC
CAAAGTCCTCAATCAGTTTGCAAAGTACAAAGTGTAGTTATCATGGTATTCTGGCAGAAA
GTTGGGATCTTAATCTGTGTACCATTCTAGCCCAAATAAAATAACCACCAATGTACAAAG
TTCTTTGGCAATGTCAATAAGTGCCCTATTTCAAATTAAAACCATATTGTGTGTGGTACA
AATGTTGATCAAAATAAGATTCTCTTTTGCCAGAGCAGCCTTCTCTCTTAAGTCATCCTT
CTCTTACTCTATTTGCAGTCTTAAACCAGAATTTTGTGAAGAACAGTGTTATTCATACTT
GACTTTGATGTCGAAAAGCAAGACATCTTGGGAACTATCTCTTTAGAAAGACAGTGTGAT
TCGGACAGTAAATACAGCATAACCTACTCCTAAATGTGTTAATTCTTTTATGGCCATGAG
TCTGAAGAAAGAGAAACATATCGTGTACTATATCTGGGGTAATTTTCATCAGAAAGTCAA
AAGATGAGATGGACTCTCTATGGGAACCAGATAAATTTGAAAAATGGCTTTGGATACATA
GAAAATCAATAGAGGGCTGCTCTCTTTTGTTTTGGAAGAACTGTCGTCATGAAACTTGAG
TTGATGCTCTCTCCTATTTAACAGGAAAACCATTCATGTCTTTAACATATTTCTTCTAAC
TGATGCAAAAAGCTTATGATAGCACGTGCAGCACACATTGATATGTGGATCTGGAGAGTG
AATCAAAACCAG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-429, gnl|bosTau2|chr20 (25446429-25446003)
               

               
               3-429, gnl|canFam2|chr19 (18157971-18157534)
               

               
               3-429, gnl|dasNov1|scaffold_13548 (47388-46933)
               

               
               3-429, gnl|hg17|chr4 (126776208-126776632)
               

               
               3-429, gnl|Hg17|chr4 (126776288-126776697)
               

               
               3-429, gnl|loxAfr1|scaffold_194 (30909-30463)
               

               
               3-429, gnl|mm7|chr3 (38832920-38833324)
               

               
               3-429, gnl|Mm7|chr3 (38833000-38833370)
               

               
               3-429, gnl|monDom2|scaffold_32 (1464434-1463947)
               

               
               3-429, gnl|oryCun1|scaffold_200176 (165549-165959)
               

               
               3-429, gnl|panTro1|chr3 (143630996-143631420)
               

               
               3-429, gnl|rheMac2|chr5 (117838608-117839032)
               

               
               3-429, gnl|rn3|chr2 (125929711-125930109)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-429, gnl|bosTau2|chr20 (25446429-25446003)
               

               
               3-429, gnl|canFam2|chr19 (18157971-18157534)
               

               
               3-429, gnl|dasNov1|scaffold_13548 (47388-46933)
               

               
               3-429, gnl|hg17|chr4 (126776208-126776632)
               

               
               3-429, gnl|Hg17|chr4 (126776288-126776697)
               

               
               3-429, gnl|loxAfr1|scaffold_194 (30909-30463)
               

               
               3-429, gnl|mm7|chr3 (38832920-38833324)
               

               
               3-429, gnl|Mm7|chr3 (38833000-38833370)
               

               
               3-429, gnl|monDom2|scaffold_32 (1464434-1463947)
               

               
               3-429, gnl|oryCun1|scaffold_200176 (165549-165959)
               

               
               3-429, gnl|panTro1|chr3 (143630996-143631420)
               

               
               3-429, gnl|rheMac2|chr5 (117838608-117839032)
               

               
               3-429, gnl|rn3|chr2 (125929711-125930109)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	3-429, gnl\|bosTau2\|chr20 (25446429-25446003)
	3-429, gnl\|canFam2\|chr19 (18157971-18157534)
	3-429, gnl\|dasNov1\|scaffold_13548 (47388-46933)
	3-429, gnl\|hg17\|chr4 (126776208-126776632)
	3-429, gnl\|Hg17\|chr4 (126776288-126776697)
	3-429, gnl\|loxAfr1\|scaffold_194 (30909-30463)
	3-429, gnl\|mm7\|chr3 (38832920-38833324)
	3-429, gnl\|Mm7\|chr3 (38833000-38833370)
	3-429, gnl\|monDom2\|scaffold_32 (1464434-1463947)
	3-429, gnl\|oryCun1\|scaffold_200176 (165549-165959)
	3-429, gnl\|panTro1\|chr3 (143630996-143631420)
	3-429, gnl\|rheMac2\|chr5 (117838608-117839032)
	3-429, gnl\|rn3\|chr2 (125929711-125930109)