Non-Coding RNA Search

Ss1.1-rebs04c_e2.5

Sequence:


               
               GTCCCAAGGTGGTACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCAAAGAGTTC
GCATTGCAATGTTCACGGGAGCGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGC
AAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATTAATAAGTGAAAAATCTG
GAAGTGTAATGGTAGAACATAAAGCTTGTATTGCTACTGTTTCAGTGCAAAAATGTACTA
GCCAATACGCTTAAGTGTGTGGCCCACAAATTGAACAGTTTAACTTTGACATCGTATCCA
TGATATTATGTGGATTTTTTACTAAGGGAAAACTAATTCATCCAGCCTAAAATGCTTCTT
TTCATCTGTGTTCTGTTCTTTCTCTTCTAGTCGTGCCATTACTAGTGCTCATGTTATCAA
TTTCCCCCCTTTACTGAAAATGATAAACATTTATTTAAAACAATTATAATCCTTCTGGGG
GCACTGGAAGCACAATGTGGTGATCATCTTGCTTTTACATTTTTTTTTAAAAAAAAATTG
AACTATGATTTTTCTAGAAATAGAAGGCCCAGTGATGGAATGTTAGAGGAATGGAAACTG
ACAATGTGTGAAGGTTTAGAGGCAAATACATAGGTGTAGCTTGGAGTTCTGGTATCTAAT
GTACCATTGTATCCACTAACTCAAAATAAACACATTTAATCTTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCAAGGTGGTACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCAAAGAGTTC
GCATTGCAATGTTCACGGGAGCGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGC
AAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATTAATAAGTGAAAAATCTG
GAAGTGTAATGGTAGAACATAAAGCTTGTATTGCTACTGTTTCAGTGCAAAAATGTACTA
GCCAATACGCTTAAGTGTGTGGCCCACAAATTGAACAGTTTAACTTTGACATCGTATCCA
TGATATTATGTGGATTTTTTACTAAGGGAAAACTAATTCATCCAGCCTAAAATGCTTCTT
TTCATCTGTGTTCTGTTCTTTCTCTTCTAGTCGTGCCATTACTAGTGCTCATGTTATCAA
TTTCCCCCCTTTACTGAAAATGATAAACATTTATTTAAAACAATTATAATCCTTCTGGGG
GCACTGGAAGCACAATGTGGTGATCATCTTGCTTTTACATTTTTTTTTAAAAAAAAATTG
AACTATGATTTTTCTAGAAATAGAAGGCCCAGTGATGGAATGTTAGAGGAATGGAAACTG
ACAATGTGTGAAGGTTTAGAGGCAAATACATAGGTGTAGCTTGGAGTTCTGGTATCTAAT
GTACCATTGTATCCACTAACTCAAAATAAACACATTTAATCTTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-434, + strand, RNAz p=0.898822

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-434, + strand, RNAz p=0.898822

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX537769, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX537769, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-716, gnl|bosTau2|chr11 (38788751-38789466)
               

               
               1-716, gnl|Hg17|chr2 (80786858-80787574)
               

               
               1-716, gnl|Mm7|chr6 (76900248-76899534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-716, gnl|bosTau2|chr11 (38788751-38789466)
               

               
               1-716, gnl|Hg17|chr2 (80786858-80787574)
               

               
               1-716, gnl|Mm7|chr6 (76900248-76899534)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fco (0.628832)
               

               
               fhi (0.339155)
               

               
               cte (0.29274)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               fhi (0.339155)
               

               
               cte (0.29274)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)

	1-716, gnl\|bosTau2\|chr11 (38788751-38789466)
	1-716, gnl\|Hg17\|chr2 (80786858-80787574)
	1-716, gnl\|Mm7\|chr6 (76900248-76899534)

	fco (0.628832)
	fhi (0.339155)
	cte (0.29274)
	ebs (0.236602)
	ece (0.229305)
	spc (0.226732)
	hyp (0.142837)
	ova (0.129132)