Non-Coding RNA Search

Ss1.1-rebs04c_m16.5

Sequence:


               
               CCAAGGCCCCCATTTTTATACACCCCTCGTTCGACCCATGGTACCGGGCAGGGCAGAGAG
GCCTTAAAATAGCACCACAAGCCAAAGCGTCTCTGGGGATTAAGGATCCTTTGCCATAAA
ATTCATTTTGTGTCTCAGCAGTGCAGGGATTGGGGATGGGAGAAGTCGCCAGTTTTTGTG
TGTTTGTGTGTGTGTGTAAAGTGGATTTTCCACTGTAATCCAACCACCTAAGTTTATCAG
GTGCTTCACTGAGGAAGCCTAGTTTTTTAAGCACAATAGCAAAACCATCAGCTCTGTATT
TTCTCTTGGTATTTCATTATAGTAGCTGCTTGTGGGGACTAGGAAAAATTCTTCCAACAT
GCTTTAAGGCCTGAAGTCTTAGTTCCCCATTCTCCTACCTTTATAGATTCACAAGCCTTT
CTCACTTGGGCCTCATAGATAAACATAATTGTTTGAGGAGTTGAATTTAATGAACTTACC
TAACTTTGTAACCCATCTTGGCTCTAGTAACTTTATCAAGGTGGCGGCTTTAGTAAATAT
AATGGTGAACTTTAGAGGAAGCTAAAGCCTCCTTTTATAATGCTTCTCAACCATAGGGAA
AACATTCTGTGTGGCAGGGTGATTTTCTTCTTTGTGGCCACTTACAGTGGATATTTATTG
TTCTTGACCCTTTATGCCCTAGAATGCTGTGGGGGGTTACCATGTTGAATTTGTGCGGAA
GCTCAAAGCACCGGATGTGCCAGAGATGCAATTTGTGATTATGTTTGCACTGGATTGTGA
TTTGAACAGGACACTTATGACTAATGAATTCTTTTGAGGTGGGGAGGAGGGTTATAAATC
AGGACTTCACATCCCACCCCTTGTAGCTCAGAGAACCTAGGGTGTAGCTGAGGTTGATGC
AGGGAGCTGCAAACAGCTGAGCCTCCTGACATGCATCAGACCGTGTAAGAAACGGAAGGT
GAATGCAGAGGACTCTGAAATACCACCCAAGAGCCTTTTAAAATAAATAAAAGTTTTTAA
AATGCTACATAAGGAGTCACTGCAGAAGCATGAAAAAAAAAAAAAAAAGACCCAACTGGG
TGGGTGGGTGGGGGGCAAGGGTTTACAGAGTAACAACTTCTGTGTTGTTGTAAATTACCT
CATCTGTATACCTTGTATTGGGACACTTCATTTCTCAGCACTACCTGTGTCTACATTGAT
TAGATGGCAGGAAATGGAATGCCAATCTAAGACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGGCCCCCATTTTTATACACCCCTCGTTCGACCCATGGTACCGGGCAGGGCAGAGAG
GCCTTAAAATAGCACCACAAGCCAAAGCGTCTCTGGGGATTAAGGATCCTTTGCCATAAA
ATTCATTTTGTGTCTCAGCAGTGCAGGGATTGGGGATGGGAGAAGTCGCCAGTTTTTGTG
TGTTTGTGTGTGTGTGTAAAGTGGATTTTCCACTGTAATCCAACCACCTAAGTTTATCAG
GTGCTTCACTGAGGAAGCCTAGTTTTTTAAGCACAATAGCAAAACCATCAGCTCTGTATT
TTCTCTTGGTATTTCATTATAGTAGCTGCTTGTGGGGACTAGGAAAAATTCTTCCAACAT
GCTTTAAGGCCTGAAGTCTTAGTTCCCCATTCTCCTACCTTTATAGATTCACAAGCCTTT
CTCACTTGGGCCTCATAGATAAACATAATTGTTTGAGGAGTTGAATTTAATGAACTTACC
TAACTTTGTAACCCATCTTGGCTCTAGTAACTTTATCAAGGTGGCGGCTTTAGTAAATAT
AATGGTGAACTTTAGAGGAAGCTAAAGCCTCCTTTTATAATGCTTCTCAACCATAGGGAA
AACATTCTGTGTGGCAGGGTGATTTTCTTCTTTGTGGCCACTTACAGTGGATATTTATTG
TTCTTGACCCTTTATGCCCTAGAATGCTGTGGGGGGTTACCATGTTGAATTTGTGCGGAA
GCTCAAAGCACCGGATGTGCCAGAGATGCAATTTGTGATTATGTTTGCACTGGATTGTGA
TTTGAACAGGACACTTATGACTAATGAATTCTTTTGAGGTGGGGAGGAGGGTTATAAATC
AGGACTTCACATCCCACCCCTTGTAGCTCAGAGAACCTAGGGTGTAGCTGAGGTTGATGC
AGGGAGCTGCAAACAGCTGAGCCTCCTGACATGCATCAGACCGTGTAAGAAACGGAAGGT
GAATGCAGAGGACTCTGAAATACCACCCAAGAGCCTTTTAAAATAAATAAAAGTTTTTAA
AATGCTACATAAGGAGTCACTGCAGAAGCATGAAAAAAAAAAAAAAAAGACCCAACTGGG
TGGGTGGGTGGGGGGCAAGGGTTTACAGAGTAACAACTTCTGTGTTGTTGTAAATTACCT
CATCTGTATACCTTGTATTGGGACACTTCATTTCTCAGCACTACCTGTGTCTACATTGAT
TAGATGGCAGGAAATGGAATGCCAATCTAAGACAGT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               157-434, - strand, RNAz p=0.998252
               

               
               554-657, - strand, RNAz p=0.545075
               

               
               813-1157, + strand, RNAz p=0.991528

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-434, - strand, RNAz p=0.998252
               

               
               554-657, - strand, RNAz p=0.545075
               

               
               813-1157, + strand, RNAz p=0.991528

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1236, gnl|bosTau2|chr13 (41855753-41854520)
               

               
               1-1236, gnl|Hg17|chr20 (411244-409986)
               

               
               1-1236, gnl|Mm7|chr2 (152021288-152022497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr13 (41855753-41854520)
               

               
               1-1236, gnl|Hg17|chr20 (411244-409986)
               

               
               1-1236, gnl|Mm7|chr2 (152021288-152022497)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	157-434, - strand, RNAz p=0.998252
	554-657, - strand, RNAz p=0.545075
	813-1157, + strand, RNAz p=0.991528

	1-1236, gnl\|bosTau2\|chr13 (41855753-41854520)
	1-1236, gnl\|Hg17\|chr20 (411244-409986)
	1-1236, gnl\|Mm7\|chr2 (152021288-152022497)

	ldo (0.194005)
	sin (0.174948)
	tbr (0.154178)
	eli (0.151814)
	spl (0.143184)
	hyp (0.142837)
	csk (0.140746)
	kid (0.129735)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	ebs (0.118301)